Your message dated Sun, 07 Feb 2016 00:08:54 +0000
with message-id <e1ascum-0004i6...@franck.debian.org>
and subject line Bug#807486: fixed in indelible 1.03-1
has caused the Debian Bug report #807486,
regarding ITP: INDELible -- A powerful and flexible simulator of biological
evolution
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
807486: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=807486
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: "Debian Med Team" <debian-...@lists.debian.org>
* Package name : INDELible
Version : 1.03
Upstream Author : William Fletcher
* URL : http://abacus.gene.ucl.ac.uk/software/indelible/
* License : GPL
Programming Lang: C++
Description : A powerful and flexible simulator of biological evolution
INDELible is a new, portable, and flexible application for biological
sequence simulation that combines many features in the same place for
the first time. Using a length-dependent model of indel formation it
can simulate evolution of multi-partitioned nucleotide, amino-acid,
or codon data sets through the processes of insertion, deletion, and
substitution in continuous time.
..
Nucleotide simulations may use the general unrestricted model or the
general time reversible model and its derivatives, and amino-acid
simulations can be conducted using fifteen different empirical rate
matrices. Substitution rate heterogeneity can be modelled via the
continuous and discrete gamma distributions, with or without a proportion
of invariant sites. INDELible can also simulate under non-homogenous
and non-stationary conditions where evolutionary models are permitted
to change across a phylogeny.
..
Unique among indel simulation programs, INDELible offers the ability to
simulate using codon models that exhibit nonsynonymous/synonymous rate
ratio heterogeneity among sites and/or lineages.
This package will be maintained as part of the Debian Med packaging team.
--- End Message ---
--- Begin Message ---
Source: indelible
Source-Version: 1.03-1
We believe that the bug you reported is fixed in the latest version of
indelible, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 807...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Fabian Klötzl <kloe...@evolbio.mpg.de> (supplier of updated indelible package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 09 Dec 2015 14:42:52 +0100
Source: indelible
Binary: indelible
Architecture: source amd64
Version: 1.03-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Fabian Klötzl <kloe...@evolbio.mpg.de>
Description:
indelible - powerful and flexible simulator of biological evolution
Closes: 807486
Changes:
indelible (1.03-1) unstable; urgency=medium
.
* Initial release. (Closes: #807486)
* Use Autotools for the build
* Added index.html for the documentation
* Added missing #includes
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