Package: wnpp Severity: wishlist Owner: Andreas Tille <ti...@debian.org>
* Package name : gubbins Version : 1.4.3 Upstream Author : Andrew J. Page <a...@sanger.ac.uk> * URL : https://sanger-pathogens.github.io/gubbins/ * License : GPL Programming Lang: C, Python Description : phylogenetic analysis of genome sequences Gubbins supports rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences. . Gubbins (Genealogies Unbiased By recomBinations In Nucleotide Sequences) is an algorithm that iteratively identifies loci containing elevated densities of base substitutions while concurrently constructing a phylogeny based on the putative point mutations outside of these regions. Simulations demonstrate the algorithm generates highly accurate reconstructions under realistic models of short-term bacterial evolution, and can be run in only a few hours on alignments of hundreds of bacterial genome sequences.
