Your message dated Fri, 16 Oct 2015 10:00:16 +0000
with message-id <e1zn1o8-0007hi...@franck.debian.org>
and subject line Bug#798873: fixed in dazzdb 1.0-1
has caused the Debian Bug report #798873,
regarding ITP: dazzdb -- database library for the dazzler assembler
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
798873: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=798873
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org>
* Package name : dazzdb
Version : 1.0
Upstream Author : Eugene W. Myers, Jr. <gene.my...@gmail.com>
* URL : https://github.com/thegenemyers/DAZZ_DB
* License : BSD
Programming Lang: C
Description : database library for the dazzler assembler
To facilitate the multiple phases of the dazzler assembler, all the read
data are organized into what is effectively a "database" of the reads and
their meta-information. The design goals for this database are as follows:
(1) The database stores the source Pacbio read information in such a way that
it can recreate the original input data, thus permitting a user to remove
the (effectively redundant) source files. This avoids duplicating the
same data, once in the source file and once in the database.
(2) The database can be built up incrementally, that is new sequence data can
be added to the database over time.
(3) The database flexibly allows one to store any meta-data desired for reads.
This is accomplished with the concept of *tracks* that implementors can
add as they need them.
(4) The data is held in a compressed form equivalent to the .dexta and .dexqv
files of the data extraction module. Both the .fasta and .quiva
information for each read is held in the database and can be recreated
from it. The .quiva information can be added separately and later on if
desired.
(5) To facilitate job parallel, cluster operation of the phases of dazzler,
the data base has a concept of a *current partitioning* in which all the
reads that are over a given length and optionally unique to a well, are
divided up into *blocks* containing roughly a given number of bases,
except possibly the last block which may have a short count. Often
programs con be run on blocks or pairs of blocks and each such job is
reasonably well balanced as the blocks are all the same size. One must
be careful about changing the partition during an assembly as doing so can
void the structural validity of any interim block-based results.
--- End Message ---
--- Begin Message ---
Source: dazzdb
Source-Version: 1.0-1
We believe that the bug you reported is fixed in the latest version of
dazzdb, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 798...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Afif Elghraoui <a...@ghraoui.name> (supplier of updated dazzdb package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 20 Sep 2015 03:11:58 -0700
Source: dazzdb
Binary: dazzdb
Architecture: source amd64
Version: 1.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Afif Elghraoui <a...@ghraoui.name>
Description:
dazzdb - manage nucleotide sequencing read data
Closes: 798873
Changes:
dazzdb (1.0-1) unstable; urgency=low
.
* Initial release (Closes: #798873)
Checksums-Sha1:
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