Your message dated Tue, 28 Jul 2015 17:00:13 +0000
with message-id <e1zk8ef-0007lj...@franck.debian.org>
and subject line Bug#789921: fixed in ecopcr 0.5.0-1
has caused the Debian Bug report #789921,
regarding ITP: ecopcr -- estimate PCR barcode primers quality
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
789921: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=789921
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>
* Package name : ecopcr
Version : 0.5.0
Upstream Author : Atelier de BioInformatique
* URL : http://www.grenoble.prabi.fr/trac/ecoPCR/
* License : CeCILL_V2
Programming Lang: C, Python
Description : estimate PCR barcode primers quality
DNA barcoding is a tool for characterizing the species origin using a
short sequence from a standard position and agreed upon position in the
genome. To be used as a DNA barcode, a genome locus should vary among
individuals of the same species only to a minor degree and it should
vary among species very quickly. From a practical point of view, a
barcode locus should be flanked by two conserved regions to design PCR
primers. Several manually discovered barcode loci like COI, rbcL, 18S,
16S and 23S rDNA, or trnH-ps are routinely used today, but no objective
function has been described to measure their quality in terms of
universality (barcode coverage, Bc ) or in terms of taxonomical
discrimination capacity (barcode specificity, Bs ).
.
ecoPCR is an electronic PCR software developed by LECA and
Helix-Project. It helps to estimate Barcode primers quality. In
conjunction with OBITools you can postprocess ecoPCR output to compute
barcode coverage and barcode specificity. New barcode primers can be
developed using the ecoPrimers software
The package is maintained by the Debian Med team at
Vcs-Git: git://anonscm.debian.org/debian-med/ecopcr.git
--- End Message ---
--- Begin Message ---
Source: ecopcr
Source-Version: 0.5.0-1
We believe that the bug you reported is fixed in the latest version of
ecopcr, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 789...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated ecopcr package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Thu, 25 Jun 2015 11:53:57 +0200
Source: ecopcr
Binary: ecopcr
Architecture: source amd64
Version: 0.5.0-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
ecopcr - estimate PCR barcode primers quality
Closes: 789921
Changes:
ecopcr (0.5.0-1) unstable; urgency=low
.
* Initial release (Closes: #789921)
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ecopcr_0.5.0-1_amd64.deb
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