Your message dated Sat, 09 Apr 2011 22:32:16 +0000
with message-id <e1q8ghu-0003ci...@franck.debian.org>
and subject line Bug#614382: fixed in transtermhp 2.07-1
has caused the Debian Bug report #614382,
regarding ITP: transtermhp -- Finds rho-independent transcription terminators
in bacterial genomes.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
614382: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=614382
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Owner: Alex Mestiashvili <a...@biotec.tu-dresden.de>
Severity: wishlist
*** Please type your report below this line ***
* Package name : transtermhp
Version : 2.0.7
Upstream Author : Carl Kingsford
* URL : http://transterm.cbcb.umd.edu/
* License : GPL
Programming Lang: C++
Description : Finds rho-independent transcription terminators in
bacterial genomes.
TransTermHP finds rho-independent transcription terminators in
bacterial genomes. Each terminator found by the program is assigned a
confidence value that estimates its probability of being a true
terminator. TransTermHP is described in:
.
C. Kingsford, K. Ayanbule and S.L. Salzberg. Rapid, accurate,
computational discovery of Rho-independent transcription terminators
illuminates their relationship to DNA uptake. Genome Biology 8:R22
(2007).
.
A predecessor system, TransTerm, that used very different search and
scoring algorithms is described in:
.
Maria D. Ermolaeva, Hanif G. Khalak, Owen White, Hamilton O. Smith and
Steven L. Salzberg. Prediction of Transcription Terminators in Bacterial
Genomes. J Mol Biol 301, (1), 27-33 (2000)
--- End Message ---
--- Begin Message ---
Source: transtermhp
Source-Version: 2.07-1
We believe that the bug you reported is fixed in the latest version of
transtermhp, which is due to be installed in the Debian FTP archive:
transtermhp_2.07-1.debian.tar.gz
to main/t/transtermhp/transtermhp_2.07-1.debian.tar.gz
transtermhp_2.07-1.dsc
to main/t/transtermhp/transtermhp_2.07-1.dsc
transtermhp_2.07-1_amd64.deb
to main/t/transtermhp/transtermhp_2.07-1_amd64.deb
transtermhp_2.07.orig.tar.gz
to main/t/transtermhp/transtermhp_2.07.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 614...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alex Mestiashvili <a...@biotec.tu-dresden.de> (supplier of updated transtermhp
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sat, 19 Feb 2011 12:36:10 +0000
Source: transtermhp
Binary: transtermhp
Architecture: source amd64
Version: 2.07-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Alex Mestiashvili <a...@biotec.tu-dresden.de>
Description:
transtermhp - find rho-independent transcription terminators in bacterial genom
Closes: 614382
Changes:
transtermhp (2.07-1) unstable; urgency=low
.
* Initial release (Closes: #614382)
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