Your message dated Thu, 31 Mar 2011 11:47:20 +0000
with message-id <e1q5glq-0001vv...@franck.debian.org>
and subject line Bug#611828: fixed in probalign 1.4-1
has caused the Debian Bug report #611828,
regarding ITP: probalign -- multiple sequence alignment using partition
function posterior probabilities
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
611828: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=611828
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: andr...@an3as.eu
* Package name : probalign
Version : 1.4
Upstream Author : Usman Roshan <us...@cs.njit.edu>
* URL : http://cs.njit.edu/usman/probalign/
* License : Public Domain
Programming Lang: C++
Description : multiple sequence alignment using partition function
posterior probabilities
Probalign uses partition function posterior probability estimates to
compute maximum expected accuracy multiple sequence alignments. It
performs statistically significantly better than the leading alignment
programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0,
HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on
datasets containing N/C terminal extensions and on datasets with long
and heterogeneous length sequences. On heteregeneous length datasets
containing repeats Probalign alignment accuracy is 10% and 15% than the
other three methods when standard deviation of length is at least 300
and 400.
The package will be maintained by the Debian Med packaging team and
is ready for upload at
Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/probalign/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/probalign/trunk/
-- System Information:
Debian Release: squeeze/sid
APT prefers stable
APT policy: (500, 'stable')
Architecture: i386 (i686)
--- End Message ---
--- Begin Message ---
Source: probalign
Source-Version: 1.4-1
We believe that the bug you reported is fixed in the latest version of
probalign, which is due to be installed in the Debian FTP archive:
probalign_1.4-1.debian.tar.gz
to main/p/probalign/probalign_1.4-1.debian.tar.gz
probalign_1.4-1.dsc
to main/p/probalign/probalign_1.4-1.dsc
probalign_1.4-1_amd64.deb
to main/p/probalign/probalign_1.4-1_amd64.deb
probalign_1.4.orig.tar.gz
to main/p/probalign/probalign_1.4.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 611...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated probalign package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 02 Feb 2011 15:45:54 +0100
Source: probalign
Binary: probalign
Architecture: source amd64
Version: 1.4-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
probalign - multiple sequence alignment using partition function posterior pr
Closes: 611828
Changes:
probalign (1.4-1) unstable; urgency=low
.
* Initial release (Closes: #611828)
(reupload with LGPL-3 license for debian/*)
Checksums-Sha1:
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b03b52e084da024780dfe051213c11e664592aeb 30060 probalign_1.4.orig.tar.gz
8881942ba0e00fe4b210a5ed889697e440ecdc51 2656 probalign_1.4-1.debian.tar.gz
605e331309a116013541d851e2e2224960c5f105 82424 probalign_1.4-1_amd64.deb
Checksums-Sha256:
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probalign_1.4-1.dsc
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probalign_1.4.orig.tar.gz
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probalign_1.4-1.debian.tar.gz
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probalign_1.4-1_amd64.deb
Files:
744cc6279a1a6801b4a1500ed9f6adb4 1319 science optional probalign_1.4-1.dsc
255d6ab775867a54d3727764b8dff561 30060 science optional
probalign_1.4.orig.tar.gz
eea85631a68b673f7ee1a11e397f9b27 2656 science optional
probalign_1.4-1.debian.tar.gz
212d95815ca7fa106c76e6085a1ff904 82424 science optional
probalign_1.4-1_amd64.deb
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--- End Message ---
