Your message dated Wed, 30 Mar 2011 13:32:11 +0000
with message-id <e1q4vvl-0006xf...@franck.debian.org>
and subject line Bug#604940: fixed in bowtie 0.12.7-1
has caused the Debian Bug report #604940,
regarding ITP: bowtie -- ultrafast memory-efficient short read aligner
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
604940: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=604940
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <steffen_moel...@gmx.de>
* Package name : bowtie
* URL : http://bowtie-bio.sf.net
* License : Artistic and LGPL
Programming Lang: C++
Description : ultrafast memory-efficient short read aligner
This package addresses the problem to interpret the results from the
latest (2010) DNA sequencing technologies. Those will yield fairly
short stretches and those cannot be interpreted directly. It is the
challenge for tools like Bowtie to give a chromosomal location to the
short stretches of DNA sequenced per run.
.
Bowtie aligns short DNA sequences (reads) to the human genome at a rate
of over 25 million 35-bp reads per hour. Bowtie indexes the genome with
a Burrows-Wheeler index to keep its memory footprint small: typically
about 2.2 GB for the human genome (2.9 GB for paired-end).
The packaging is already completed and can be inspected at
http://svn.debian.org/wsvn/debian-med/trunk/packages/bowtie/trunk/
--- End Message ---
--- Begin Message ---
Source: bowtie
Source-Version: 0.12.7-1
We believe that the bug you reported is fixed in the latest version of
bowtie, which is due to be installed in the Debian FTP archive:
bowtie-examples_0.12.7-1_all.deb
to main/b/bowtie/bowtie-examples_0.12.7-1_all.deb
bowtie_0.12.7-1.debian.tar.gz
to main/b/bowtie/bowtie_0.12.7-1.debian.tar.gz
bowtie_0.12.7-1.dsc
to main/b/bowtie/bowtie_0.12.7-1.dsc
bowtie_0.12.7-1_amd64.deb
to main/b/bowtie/bowtie_0.12.7-1_amd64.deb
bowtie_0.12.7.orig.tar.gz
to main/b/bowtie/bowtie_0.12.7.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 604...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated bowtie package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Wed, 02 Feb 2011 13:47:12 +0100
Source: bowtie
Binary: bowtie bowtie-examples
Architecture: source amd64 all
Version: 0.12.7-1
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
bowtie - ultrafast memory-efficient short read aligner
bowtie-examples - Examples for bowtie, the ultrafast memory-efficient short
read al
Closes: 604940
Changes:
bowtie (0.12.7-1) unstable; urgency=low
.
* Initial release (Closes: #604940)
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bowtie-examples_0.12.7-1_all.deb
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--- End Message ---
