Still no solution but an interesting tidbit: I've tried running
pm-hibernate from the console with debugging.

This meant that X session was not locked and, now after resuming, the apps
are still there and the mouse moves. Thing is, nothing else works: can't
click anywhere, alt-tab does nothing, only switching back to console works.
Clock is stuck at 20 minutes ago, too.

Also, the mouse pointer occasionally changes shape when I hover above
certain spots and weirdly enough it uses the desktop icon.

Any ideas?

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