Hi,
I installed Debian 6 on my machine. Everything was going fine, but at
some point, after installing Gaussian 09 and writing in the .bashrc
file the lines I'm reporting below, the connection starting
oscillating.
Sometimes it goes for 2 or 3 minutes, then it comes back and so on.
Even after deleting those lines the problem persists. I also tried
restarting the network but it won't help.
I'm pretty sure the problem comes from these lines, because the same
thing happened with two other operative systems and I don't think it
can be a pure coincidence.
Can anybody help me? Thanks in advance.
The lines I wrote in the .bashrc file are the following:
g09root="dir"
GAUSS_SCRDIR="sdir"
export g09root GAUSS_SCRDIR
. $g09root/g09/bsd/g09.profile
the file g09.profile contains the following lines:
#
# These commands set up for use of Gaussian 09. They should be source'd
# into each Gaussian 09 user's .login file, after setting the following
# environment variable:
#
# g09root -- Directory which contains the g09 main directory. Defaults
# to users's home directory if not defined before entry.
#
# Top directories for the program:
#
gr=$HOME
if [ "$g09root" ]
then gr=$g09root
fi
export GAUSS_EXEDIR="$gr/g09/bsd:$gr/g09/local:$gr/g09/extras:$gr/g09"
export GAUSS_LEXEDIR="$gr/g09/linda-exe"
export GAUSS_ARCHDIR="$gr/g09/arch"
export GV_DIR="$gr/gv"
if [ -e "$GV_DIR/gview.app" ]; then
alias gv='open $GV_DIR/gview.app'
else
alias gv="$GV_DIR/gview.csh"
fi
if [ "$PATH" ]; then
export PATH="$PATH:$GAUSS_EXEDIR"
else
export PATH="$GAUSS_EXEDIR"
fi
export _DSM_BARRIER="SHM"
if [ "$LD_LIBRARY64_PATH" ]; then
export LD_LIBRARY64_PATH="$GAUSS_EXEDIR:$GV_DIR/lib:$LD_LIBRARY64_PATH"
else
if [ "$LD_LIBRARY_PATH" ]; then
# gv lib has to be at end for IA64 otherwise IA32 .so files there confuse thin
gs
export LD_LIBRARY_PATH="$GAUSS_EXEDIR:$LD_LIBRARY_PATH:$GV_DIR/lib"
else
export LD_LIBRARY_PATH="$GAUSS_EXEDIR:$GV_DIR/lib"
fi
fi
export G09BASIS="$gr/g09/basis"
alias sl="$gr/g09/tests/searchlog.csh"
mach="$(gau-machine)"
if [ "$mach" = "necsx" ]; then
export F_ERROPT1="271,271,2,1,2,2,2,2"
export F_ERROPT2="741,741,2,2,2,2,2,2"
export OMP_NUM_THREADS="1"
fi
if [ "$mach" = "sgi" ]; then
export _RLD_ARGS="-log /dev/null"
export TRAP_FPE="OVERFL=ABORT;DIVZERO=ABORT;INT_OVERFL=ABORT"
export MP_STACK_OVERFLOW="OFF"
fi
if [ "$mach" = "ia64" ]; then
# The following is to avoid weirdness with Intel's MKL library on IA64:
export KMP_STACKSIZE="20971520"
export KMP_AFFINITY="disabled"
place="`which dplace`"
if [ "$?" == 0 ] ; then
export GAUSS_DPLACE="1"
fi
fi
if [ "$mach" = "crayx1" ]; then
# avoid small heap limit on Cray X1
export X1_LOCAL_HEAP_SIZE='0xbff7000000'
fi
if [ "$mach" = "ibm_rs6k_linux" ]; then
# fix LD_LIBRARY_PATH so that the Linda workers can start
export LD_LIBRARY_PATH="/opt/ibmcmp/lib64:$LD_LIBRARY_PATH"
fi
export PGI_TERM='trace,abort'
ulimit -c 0
ulimit -d hard
ulimit -f hard
ulimit -l hard
ulimit -m hard
ulimit -n hard
ulimit -s hard
ulimit -t hard
ulimit -u hard
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