Hi,
when I tried AutoDockTools, which showed me something like
IndexError: list index out of range
Is it something relevant to driver or Pmv or ?
Thanks,
P.S the problem detailful log.
Run AutoDockTools from /usr/lib/python2.6/dist-packages/AutoDockTools
Resource file used to customize PMV: /home/lina/.mgltools/1.5.4/Pmv/_pmvrc
Warning (from warnings module):
File "/usr/lib/python2.6/dist-packages/DejaVu/Clip.py", line 98
self.Ri = glCleanRotMat(self.Ri)
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
>>>
Warning (from warnings module):
File "/usr/lib/python2.6/dist-packages/DejaVu/Clip.py", line 98
self.Ri = glCleanRotMat(self.Ri)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
>>> Traceback (most recent call last):
File "/usr/lib/python2.6/dist-packages/AutoDockTools/__init__.py",
line 374, in runADT
title=title, withShell= not interactive, verbose=False)
File "/usr/lib/python2.6/dist-packages/Pmv/moleculeViewer.py", line
315, in __init__
verbose=verbose, trapExceptions=trapExceptions)
File "/usr/lib/python2.6/dist-packages/ViewerFramework/VF.py", line
345, in __init__
verbose=verbose)
File "/usr/lib/python2.6/dist-packages/ViewerFramework/VFGUI.py",
line 277, in __init__
cnf = {"addScenarioButton": False})
File "/usr/lib/python2.6/dist-packages/DejaVu/Viewer.py", line 676,
in __init__
cp = ClippingPlane(self.rootObject, i, self)
File "/usr/lib/python2.6/dist-packages/DejaVu/Clip.py", line 42, in __init__
self.id = self.clipPlaneNames[num]
IndexError: list index out of range
hit enter to continue
after I hit enter, the interface just disappeared.
--
Best Regards,
lina
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