Wow. If you haven't already, you should immediately backup the box before trying some magic on it. It's probably located at ~/.mozilla-thunderbird/$profile/Mail/Local Folders/Inbox.

What's the size of the box? If it looks too small, open it with a text editor or another mail agent and check if your older mails are actually in there.

If nothing is lost, you could firstly try compacting the box in thunderbird (right click on it, then "Compact"). That might fix the error as a side-effect, but I wouldn't bet too much money on it.

Can't think of anything clever, maybe someone has an idea.

Bonne chance.

-thib


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