> No, the main point is to work in collaboration with the upstream, understand 
> their choices even if you do not agreed with their choices, and at the end, 
> they need to thrust us when we propose patches which will (at the end) 
> enlarge the community of their users.
> 
> it can take a long time but it is always rewarding to see a package 
> integrated in the main archive.
> 
> so use their build system, send patches with did not change their defaults. 
> that way they will understand that we try to build cctbx with them an not 
> against them :)
You are absolutely right and I'll keep that in mind :)!
> 
> As I understand we will have to provide a --use-system-library option to 
> avoid compiling thoses boos_python etc... bundeled libraries.
> and also to integrate a few of their patches in the other upstream libraries 
> like libcbf ...
Good idea! I'll put it on the TODO list.


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