Your message dated Wed, 11 May 2016 13:27:50 +0000 with message-id <e1b0ub4-0005xv...@franck.debian.org> and subject line Bug#820866: fixed in r-cran-tgp 2.4-14-1 has caused the Debian Bug report #820866, regarding r-cran-tgp: FTBFS: cmath:171:3: error: template with C linkage to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 820866: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=820866 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-cran-tgp Version: 2.4-9-1 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, r-cran-tgp fails to build from source in unstable/amd64: [..] /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:171:3: error: template with C linkage template<typename _Tp, typename _Up> ^ /usr/include/c++/5/cmath: In function 'long double std::ceil(long double)': /usr/include/c++/5/cmath:188:23: error: conflicting declaration of C function 'long double std::ceil(long double)' ceil(long double __x) ^ /usr/include/c++/5/cmath:184:3: note: previous declaration 'float std::ceil(float)' ceil(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:192:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::cos(long double)': /usr/include/c++/5/cmath:207:22: error: conflicting declaration of C function 'long double std::cos(long double)' cos(long double __x) ^ /usr/include/c++/5/cmath:203:3: note: previous declaration 'float std::cos(float)' cos(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:211:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::cosh(long double)': /usr/include/c++/5/cmath:226:23: error: conflicting declaration of C function 'long double std::cosh(long double)' cosh(long double __x) ^ /usr/include/c++/5/cmath:222:3: note: previous declaration 'float std::cosh(float)' cosh(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:230:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::exp(long double)': /usr/include/c++/5/cmath:245:22: error: conflicting declaration of C function 'long double std::exp(long double)' exp(long double __x) ^ /usr/include/c++/5/cmath:241:3: note: previous declaration 'float std::exp(float)' exp(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:249:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::fabs(long double)': /usr/include/c++/5/cmath:264:23: error: conflicting declaration of C function 'long double std::fabs(long double)' fabs(long double __x) ^ /usr/include/c++/5/cmath:260:3: note: previous declaration 'float std::fabs(float)' fabs(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:268:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::floor(long double)': /usr/include/c++/5/cmath:283:24: error: conflicting declaration of C function 'long double std::floor(long double)' floor(long double __x) ^ /usr/include/c++/5/cmath:279:3: note: previous declaration 'float std::floor(float)' floor(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:287:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::fmod(long double, long double)': /usr/include/c++/5/cmath:302:40: error: conflicting declaration of C function 'long double std::fmod(long double, long double)' fmod(long double __x, long double __y) ^ /usr/include/c++/5/cmath:298:3: note: previous declaration 'float std::fmod(float, float)' fmod(float __x, float __y) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:306:3: error: template with C linkage template<typename _Tp, typename _Up> ^ /usr/include/c++/5/cmath: In function 'long double std::frexp(long double, int*)': /usr/include/c++/5/cmath:323:36: error: conflicting declaration of C function 'long double std::frexp(long double, int*)' frexp(long double __x, int* __exp) ^ /usr/include/c++/5/cmath:319:3: note: previous declaration 'float std::frexp(float, int*)' frexp(float __x, int* __exp) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:327:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::ldexp(long double, int)': /usr/include/c++/5/cmath:342:35: error: conflicting declaration of C function 'long double std::ldexp(long double, int)' ldexp(long double __x, int __exp) ^ /usr/include/c++/5/cmath:338:3: note: previous declaration 'float std::ldexp(float, int)' ldexp(float __x, int __exp) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:346:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::log(long double)': /usr/include/c++/5/cmath:361:22: error: conflicting declaration of C function 'long double std::log(long double)' log(long double __x) ^ /usr/include/c++/5/cmath:357:3: note: previous declaration 'float std::log(float)' log(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:365:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::log10(long double)': /usr/include/c++/5/cmath:380:24: error: conflicting declaration of C function 'long double std::log10(long double)' log10(long double __x) ^ /usr/include/c++/5/cmath:376:3: note: previous declaration 'float std::log10(float)' log10(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:384:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::modf(long double, long double*)': /usr/include/c++/5/cmath:399:44: error: conflicting declaration of C function 'long double std::modf(long double, long double*)' modf(long double __x, long double* __iptr) ^ /usr/include/c++/5/cmath:395:3: note: previous declaration 'float std::modf(float, float*)' modf(float __x, float* __iptr) ^ /usr/include/c++/5/cmath: In function 'long double std::pow(long double, long double)': /usr/include/c++/5/cmath:411:39: error: conflicting declaration of C function 'long double std::pow(long double, long double)' pow(long double __x, long double __y) ^ /usr/include/c++/5/cmath:407:3: note: previous declaration 'float std::pow(float, float)' pow(float __x, float __y) ^ /usr/include/c++/5/cmath: In function 'double std::pow(double, int)': /usr/include/c++/5/cmath:418:26: error: conflicting declaration of C function 'double std::pow(double, int)' pow(double __x, int __i) ^ /usr/include/c++/5/cmath:411:3: note: previous declaration 'long double std::pow(long double, long double)' pow(long double __x, long double __y) ^ /usr/include/c++/5/cmath:418:26: error: conflicting declaration of C function 'double std::pow(double, int)' pow(double __x, int __i) ^ /usr/include/c++/5/cmath:407:3: note: previous declaration 'float std::pow(float, float)' pow(float __x, float __y) ^ /usr/include/c++/5/cmath: In function 'float std::pow(float, int)': /usr/include/c++/5/cmath:422:25: error: conflicting declaration of C function 'float std::pow(float, int)' pow(float __x, int __n) ^ /usr/include/c++/5/cmath:418:3: note: previous declaration 'double std::pow(double, int)' pow(double __x, int __i) ^ /usr/include/c++/5/cmath:422:25: error: conflicting declaration of C function 'float std::pow(float, int)' pow(float __x, int __n) ^ /usr/include/c++/5/cmath:411:3: note: previous declaration 'long double std::pow(long double, long double)' pow(long double __x, long double __y) ^ /usr/include/c++/5/cmath:422:25: error: conflicting declaration of C function 'float std::pow(float, int)' pow(float __x, int __n) ^ /usr/include/c++/5/cmath:407:3: note: previous declaration 'float std::pow(float, float)' pow(float __x, float __y) ^ /usr/include/c++/5/cmath: In function 'long double std::pow(long double, int)': /usr/include/c++/5/cmath:426:31: error: conflicting declaration of C function 'long double std::pow(long double, int)' pow(long double __x, int __n) ^ /usr/include/c++/5/cmath:422:3: note: previous declaration 'float std::pow(float, int)' pow(float __x, int __n) ^ /usr/include/c++/5/cmath:426:31: error: conflicting declaration of C function 'long double std::pow(long double, int)' pow(long double __x, int __n) ^ /usr/include/c++/5/cmath:418:3: note: previous declaration 'double std::pow(double, int)' pow(double __x, int __i) ^ /usr/include/c++/5/cmath:426:31: error: conflicting declaration of C function 'long double std::pow(long double, int)' pow(long double __x, int __n) ^ /usr/include/c++/5/cmath:411:3: note: previous declaration 'long double std::pow(long double, long double)' pow(long double __x, long double __y) ^ /usr/include/c++/5/cmath:426:31: error: conflicting declaration of C function 'long double std::pow(long double, int)' pow(long double __x, int __n) ^ /usr/include/c++/5/cmath:407:3: note: previous declaration 'float std::pow(float, float)' pow(float __x, float __y) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:431:3: error: template with C linkage template<typename _Tp, typename _Up> ^ /usr/include/c++/5/cmath: In function 'long double std::sin(long double)': /usr/include/c++/5/cmath:448:22: error: conflicting declaration of C function 'long double std::sin(long double)' sin(long double __x) ^ /usr/include/c++/5/cmath:444:3: note: previous declaration 'float std::sin(float)' sin(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:452:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::sinh(long double)': /usr/include/c++/5/cmath:467:23: error: conflicting declaration of C function 'long double std::sinh(long double)' sinh(long double __x) ^ /usr/include/c++/5/cmath:463:3: note: previous declaration 'float std::sinh(float)' sinh(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:471:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::sqrt(long double)': /usr/include/c++/5/cmath:486:23: error: conflicting declaration of C function 'long double std::sqrt(long double)' sqrt(long double __x) ^ /usr/include/c++/5/cmath:482:3: note: previous declaration 'float std::sqrt(float)' sqrt(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:490:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::tan(long double)': /usr/include/c++/5/cmath:505:22: error: conflicting declaration of C function 'long double std::tan(long double)' tan(long double __x) ^ /usr/include/c++/5/cmath:501:3: note: previous declaration 'float std::tan(float)' tan(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:509:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath: In function 'long double std::tanh(long double)': /usr/include/c++/5/cmath:524:23: error: conflicting declaration of C function 'long double std::tanh(long double)' tanh(long double __x) ^ /usr/include/c++/5/cmath:520:3: note: previous declaration 'float std::tanh(float)' tanh(float __x) ^ /usr/include/c++/5/cmath: At global scope: /usr/include/c++/5/cmath:528:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:831:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:841:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:850:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:859:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:868:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:877:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:890:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:899:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:908:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:917:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:926:3: error: template with C linkage template<typename _Tp> ^ /usr/include/c++/5/cmath:935:3: error: template with C linkage template<typename _Tp> ^ /usr/lib/R/etc/Makeconf:139: recipe for target 'base.o' failed make[1]: *** [base.o] Error 1 make[1]: Leaving directory '/home/lamby/temp/cdt.20160413100854.Po7RDyxvZA.r-cran-tgp/r-cran-tgp-2.4-9/src' make[1]: Entering directory '/home/lamby/temp/cdt.20160413100854.Po7RDyxvZA.r-cran-tgp/r-cran-tgp-2.4-9/src' make[1]: Leaving directory '/home/lamby/temp/cdt.20160413100854.Po7RDyxvZA.r-cran-tgp/r-cran-tgp-2.4-9/src' ERROR: compilation failed for package 'tgp' * removing '/home/lamby/temp/cdt.20160413100854.Po7RDyxvZA.r-cran-tgp/r-cran-tgp-2.4-9/debian/r-cran-tgp/usr/lib/R/site-library/tgp' /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed make: *** [R_any_arch] Error 1 [..] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
r-cran-tgp.2.4-9-1.unstable.amd64.log.txt.gz
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--- Begin Message ---Source: r-cran-tgp Source-Version: 2.4-14-1 We believe that the bug you reported is fixed in the latest version of r-cran-tgp, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 820...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Pablo Oliveira <pa...@sifflez.org> (supplier of updated r-cran-tgp package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 3 May 2016 14:53:00 +0200 Source: r-cran-tgp Binary: r-cran-tgp Architecture: source amd64 Version: 2.4-14-1 Distribution: unstable Urgency: low Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org> Changed-By: Pablo Oliveira <pa...@sifflez.org> Description: r-cran-tgp - GNU R package "tgp: Bayesian treed Gaussian process models" Closes: 820866 Changes: r-cran-tgp (2.4-14-1) unstable; urgency=low . * Upgrade to 2.4-14 from upstream (closes: #820866) * Update dependencies (r-cran-tgp now depends on r-cran-maptree) * Ensure hardening flags used during build * Upgrade policy Checksums-Sha1: 5c3d44a40563411c2b48f97962a0074f6351a887 2057 r-cran-tgp_2.4-14-1.dsc 7097d417f7ac8a2e5e04ff6fb8d39395c6b888d4 2435341 r-cran-tgp_2.4-14.orig.tar.gz 9022a01c61248a29c4d26a27d3e6635a8b8066a8 2112 r-cran-tgp_2.4-14-1.debian.tar.xz 509b75d0803c35fd51fcad05553ed96ce0b5fe51 360844 r-cran-tgp-dbgsym_2.4-14-1_amd64.deb 391d5261576a2bf35331730b059e314fb0aa35bc 2309894 r-cran-tgp_2.4-14-1_amd64.deb Checksums-Sha256: 6d0caa6dca67c610daa5fb41288150d06a8703c111a845c33bf771021cf26e54 2057 r-cran-tgp_2.4-14-1.dsc 612a44d5e6ce878a03ad32e05f37faaf45eba4f5f5365c0ecc4b1738a5d673d0 2435341 r-cran-tgp_2.4-14.orig.tar.gz f3f199988b8f2fd07f6eef413462e84c5b0af99b25f6fc8d06a17ea33f59f697 2112 r-cran-tgp_2.4-14-1.debian.tar.xz 108e88028c6b30216a9809fe04d42c4cf69d401b81fce6ac1aed78adf518d023 360844 r-cran-tgp-dbgsym_2.4-14-1_amd64.deb 0f147110f74e6f358e80907a1abc93ddf14089b5264269954aeb1018de7b50c1 2309894 r-cran-tgp_2.4-14-1_amd64.deb Files: cf021db50dd5390abe6bca8c2ac9c700 2057 gnu-r optional r-cran-tgp_2.4-14-1.dsc 9d732f7a48c4e386162102b11668d821 2435341 gnu-r optional r-cran-tgp_2.4-14.orig.tar.gz f961cb91178c49af58c4ebbbc43e8273 2112 gnu-r optional r-cran-tgp_2.4-14-1.debian.tar.xz 7d3fa933cff5bb7a2336afa74170d6b1 360844 debug extra r-cran-tgp-dbgsym_2.4-14-1_amd64.deb be2ade3c37129f65832a1bcf86bd26f2 2309894 gnu-r optional r-cran-tgp_2.4-14-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXMzA5AAoJEFeKBJTRxkbR4/IP/idajjo6cLDaq6jr2Em1NwMS ExYncn7opnZ8lWv51gl2BlDEXrVAMedssfeuI0UVn3LFGAQDRKnal7d3vvgMtdJG ZGJMlgNIikDteTPeX2XTTYTY0scGB1n3d+M/stSWE07GeBqv97g3Uvs3jwZTL8cl ZiZyUi/kj+vWnktluxRrvdjJEUZiPUQbd88PfYtu60aEy0H+oh4D+ODRLrZ1VEXH IbVwimRdyYZ73wYB9H4yw7/+gf2nIGP3XgxqNC5LY0Kpws95bSfEJ527uXTjKUt3 8Xj48CYNeOlGQi3CdSnIbsZWOFQEP62hMEmO+OhDEzPgNUw5egtKONSuXpsIiNs/ qEt4aeU5alKSk+7B2HHfmuneEYQWP1weOYarBD8rGl+YhNIJbKZaNH6uCS2TTB9n 7f4Km67cdzBiDVlRBhsfCf+KibX7qjK9gOSZgK/cJRF+75Ro8Vq8l7rmgQUIktBm IJpsjWo48YP1N9g36eaUkqTxbZLttxyjrfmyvxvvG4D9SBTcIRZn2dT25RRcpFZJ ddanEkK1qKINcnvKjQe3iksXkcow0Wnl8l7wOJZqTWh+WoQ6YNiuGgqzIaYGvsnx FW0IxyXl0Gx5ozglO+ZVJkIXgG0GMwmeJRIbNVNSVk2Fwd+KyIzaKDzB+eyInEXF hJ5fE4alc2nYnz71z109 =FOMx -----END PGP SIGNATURE-----
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