Your message dated Wed, 22 Jan 2025 08:44:30 +0000
with message-id <e1tawle-007ueb...@fasolo.debian.org>
and subject line Bug#1093752: fixed in coot 1.1.09+dfsg-4
has caused the Debian Bug report #1093752,
regarding coot: fix ftbfs on riscv64 and mips64el
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1093752: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1093752
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: coot
Version: 1.1.09+dfsg-3
Severity: important
Tags: ftbfs patch
User: debian-ri...@lists.debian.org
Usertags: riscv64
User: debian-m...@lists.debian.org
Usertags: mips64el
X-Debbugs-Cc: debian-ri...@lists.debian.org, debian-m...@lists.debian.org
Dear Maintainer,
coot has FTBFS issues on riscv64 and mips64el due to atomic issue:
```
...
/usr/bin/ld: mini-rsr.o: in function `bool
boost::lockfree::queue<std::function<void (int)>*>::pop<std::function<void
(int)>*>(std::function<void (int)>*&)':
/usr/include/boost/lockfree/queue.hpp:448:(.text._ZN5boost8lockfree5queueIPSt8functionIFviEEJEE3popIS5_EEbRT_[_ZN5boost8lockfree5queueIPSt8functionIFviEEJEE3popIS5_EEbRT_]+0xfa):
undefined reference to `__atomic_compare_exchange_16'
collect2: error: ld returned 1 exit status
...
```
See
https://buildd.debian.org/status/fetch.php?pkg=coot&arch=mips64el&ver=1.1.09%2Bdfsg-3&stamp=1736993525&raw=0
and
https://buildd.debian.org/status/fetch.php?pkg=coot&arch=riscv64&ver=1.1.09%2Bdfsg-3&stamp=1737361754&raw=0
The workaround is to link libatomic explicitly and I have tested it on
riscv64 but no test on mips64el.
Please let me know if any issues.
--
Regards,
--
Bo YU
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--- End Message ---
--- Begin Message ---
Source: coot
Source-Version: 1.1.09+dfsg-4
Done: Andrius Merkys <mer...@debian.org>
We believe that the bug you reported is fixed in the latest version of
coot, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1093...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <mer...@debian.org> (supplier of updated coot package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 22 Jan 2025 03:13:31 -0500
Source: coot
Architecture: source
Version: 1.1.09+dfsg-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Andrius Merkys <mer...@debian.org>
Closes: 1080574 1085529 1093752
Changes:
coot (1.1.09+dfsg-4) unstable; urgency=medium
.
[ Alexandre Detiste ]
* Add build-dep on python3-setuptools (Closes: #1080574)
* Fix SyntaxWarning (Closes: #1085529)
* Apply Multi-Arch: hint
.
[ Andrius Merkys ]
* Fix FTBFS issues with libatomic on riscv64 and mips64el (Closes: 1093752).
Thanks Bo YU.
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