Your message dated Wed, 20 Nov 2024 14:53:49 +0000
with message-id <e1tdm5v-00ay2t...@fasolo.debian.org>
and subject line Bug#1078904: fixed in silo-llnl 4.11-6.1
has caused the Debian Bug report #1078904,
regarding silo-llnl: FTBFS against HDF5 1.14
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1078904: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1078904
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: silo-llnl
Version: 4.11-6
Severity: important
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Hi,
The silo-llnl package fails to build from source in a test rebuild against
hdf5 1.14 currently in experimental:
libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo
-I./../fpzip -DH5_HAVE_FILTER_ZFP -DH5Z_ZFP_AS_LIB -DAS_SILO_BUILTIN
-I./../zfp-0.5.5/include -I/usr/include/hdf5/openmpi -I/usr/inclu
de/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtGui
-I/usr/include/x86_64-linux-gnu/qt5/QtCore
-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/lib/openmpi/include
-Wdate-time -D_FORTIFY_SOURCE
=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC
-D_LARGEFILE_SOURCE -
D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c
H5FDsilo.c -fPIC -DPIC -o .libs/H5FDsilo.o
H5FDsilo.c:502:5: error: initialization of 'unsigned int' from 'char *' makes
integer from pointer without a cast [-Wint-conversion]
502 | "silo", /*name
*/
| ^~~~~~
H5FDsilo.c:502:5: note: (near initialization for 'H5FD_silo_g.version')
H5FDsilo.c:502:5: error: initializer element is not computable at load time
H5FDsilo.c:502:5: note: (near initialization for 'H5FD_silo_g.version')
H5FDsilo.c:463:17: warning: overflow in conversion from 'long unsigned int' to
'int' changes value from '9223372036854775807' to '-1' [-Woverflow]
463 | #define MAXADDR (((haddr_t)1<<(8*sizeof(file_offset_t)-1))-1)
| ^
H5FDsilo.c:503:5: note: in expansion of macro 'MAXADDR'
503 | MAXADDR, /*maxaddr
*/
| ^~~~~~~
H5FDsilo.c:504:5: error: initialization of 'const char *' from 'int' makes
pointer from integer without a cast [-Wint-conversion]
504 | H5F_CLOSE_WEAK, /* fc_degree
*/
| ^~~~~~~~~~~~~~
H5FDsilo.c:504:5: note: (near initialization for 'H5FD_silo_g.name')
H5FDsilo.c:508:5: error: incompatible types when initializing type 'enum
H5F_close_degree_t' using type 'hsize_t (*)(H5FD_t *)' {aka 'long unsigned int
(*)(H5FD_t *)'}
508 | H5FD_silo_sb_size, /*sb_size
*/
| ^~~~~~~~~~~~~~~~~
H5FDsilo.c:509:5: error: initialization of 'herr_t (*)(void)' {aka 'int
(*)(void)'} from incompatible pointer type 'herr_t (*)(H5FD_t *, char *,
unsigned char *)' {aka 'int (*)(H5FD_t *, char *, unsigned char *)'}
[-Wincompatible-pointer-types]
509 | H5FD_silo_sb_encode, /*sb_encode
*/
| ^~~~~~~~~~~~~~~~~~~
H5FDsilo.c:509:5: note: (near initialization for 'H5FD_silo_g.terminate')
libtool: compile: mpicc -DHAVE_CONFIG_H -I. -I../.. -I./../silo -I./../silo
-I./../fpzip -DH5_HAVE_FILTER_ZFP -DH5Z_ZFP_AS_LIB -DAS_SILO_BUILTIN
-I./../zfp-0.5.5/include -I/usr/include/hdf5/openmpi -I/usr/inclu
de/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtGui
-I/usr/include/x86_64-linux-gnu/qt5/QtCore
-I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/lib/openmpi/include
-Wdate-time -D_FORTIFY_SOURCE
=2 -g -O2 -Werror=implicit-function-declaration
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fPIC
-D_LARGEFILE_SOURCE -
D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -c
H5FDsilo.c -fPIC -DPIC -o .libs/H5FDsilo.o
H5FDsilo.c:502:5: error: initialization of 'unsigned int' from 'char *' makes
integer from pointer without a cast [-Wint-conversion]
502 | "silo", /*name
*/
| ^~~~~~
H5FDsilo.c:502:5: note: (near initialization for 'H5FD_silo_g.version')
H5FDsilo.c:502:5: error: initializer element is not computable at load time
H5FDsilo.c:502:5: note: (near initialization for 'H5FD_silo_g.version')
H5FDsilo.c:463:17: warning: overflow in conversion from 'long unsigned int' to
'int' changes value from '9223372036854775807' to '-1' [-Woverflow]
463 | #define MAXADDR (((haddr_t)1<<(8*sizeof(file_offset_t)-1))-1)
| ^
H5FDsilo.c:503:5: note: in expansion of macro 'MAXADDR'
503 | MAXADDR, /*maxaddr
*/
| ^~~~~~~
H5FDsilo.c:504:5: error: initialization of 'const char *' from 'int' makes
pointer from integer without a cast [-Wint-conversion]
504 | H5F_CLOSE_WEAK, /* fc_degree
*/
| ^~~~~~~~~~~~~~
H5FDsilo.c:504:5: note: (near initialization for 'H5FD_silo_g.name')
H5FDsilo.c:508:5: error: incompatible types when initializing type 'enum
H5F_close_degree_t' using type 'hsize_t (*)(H5FD_t *)' {aka 'long unsigned int
(*)(H5FD_t *)'}
508 | H5FD_silo_sb_size, /*sb_size
*/
| ^~~~~~~~~~~~~~~~~
H5FDsilo.c:509:5: error: initialization of 'herr_t (*)(void)' {aka 'int
(*)(void)'} from incompatible pointer type 'herr_t (*)(H5FD_t *, char *,
unsigned char *)' {aka 'int (*)(H5FD_t *, char *, unsigned char *)'}
[-Wincompatible-pointer-types]
509 | H5FD_silo_sb_encode, /*sb_encode
*/
| ^~~~~~~~~~~~~~~~~~~
H5FDsilo.c:509:5: note: (near initialization for 'H5FD_silo_g.terminate')
Full build log attached.
Best,
_g.
- -- System Information:
Debian Release: 12.0
Architecture: amd64 (x86_64)
Kernel: Linux 6.1.0-21-amd64 (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled
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silo-llnl_4.11-6_amd64.build.gz
Description: application/gzip
--- End Message ---
--- Begin Message ---
Source: silo-llnl
Source-Version: 4.11-6.1
Done: Alastair McKinstry <mckins...@debian.org>
We believe that the bug you reported is fixed in the latest version of
silo-llnl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1078...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Alastair McKinstry <mckins...@debian.org> (supplier of updated silo-llnl
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 20 Nov 2024 12:58:02 +0000
Source: silo-llnl
Architecture: source
Version: 4.11-6.1
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Alastair McKinstry <mckins...@debian.org>
Closes: 1078904
Changes:
silo-llnl (4.11-6.1) unstable; urgency=medium
.
[ Gilles Filippini ]
* Non-maintainer upload.
* Patch hdf5-1.14.patch to support HDF5 1.14. Closes: #1078904
Checksums-Sha1:
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427e143fad18ef9b72571dfda4d360cd02895127 15268 silo-llnl_4.11-6.1.debian.tar.xz
Checksums-Sha256:
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silo-llnl_4.11-6.1.dsc
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silo-llnl_4.11-6.1.debian.tar.xz
Files:
13d1d3daa24c02f11c11adfd29514b97 2490 science optional silo-llnl_4.11-6.1.dsc
fff4d90fbe2864d2cad4ff018f3d7a13 15268 science optional
silo-llnl_4.11-6.1.debian.tar.xz
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