Package: src:mshr
Version: 2019.2.0~git20230811.ff54a68+dfsg1-3
Severity: serious
Tags: ftbfs
Dear maintainer:
During a rebuild of all packages in unstable, your package failed to build:
--------------------------------------------------------------------------------
[...]
debian/rules build
py3versions: no X-Python3-Version in control file, using supported versions
dh build --buildsystem=cmake \
--with python3 \
--no-parallel
dh_update_autotools_config -O--buildsystem=cmake
dh_autoreconf -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
py3versions: no X-Python3-Version in control file, using supported versions
PETSC_DIR=/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real
SLEPC_DIR=/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real dh_auto_configure --builddir=obj-x86_64-linux-gnu --
-D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D
USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D
CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D
CMAKE_CXX_FLAGS:STRING="-fpermissive -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection"
/<<PKGBUILDDIR>>/
cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake
-DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix
Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D
BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D
CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D
"CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection"
/<<BUILDDIR>>/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Targeting Unix Makefiles
-- Using /usr/bin/c++ compiler.
-- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so
-- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so
CMake Warning (dev) at
/usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
Call Stack (most recent call first):
/usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48
(include)
/usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include)
CMakeLists.txt:17 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable
version "1.83.0", minimum required is "1.72")
-- Boost include dirs: /usr/include
-- Boost libraries:
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Using gcc version 4 or later. Adding -frounding-math
CMake Warning (dev) at
/usr/share/cmake-3.30/Modules/FindPackageHandleStandardArgs.cmake:441 (message):
The package name passed to `find_package_handle_standard_args` (TETGEN)
does not match the name of the calling package (TetGen). This can lead to
problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
CMakeLists.txt:32 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so
CMake Warning (dev) at CMakeLists.txt:59 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/include (found version "1.83.0") found components: system
filesystem program_options
-- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is
"3.1.0")
CMake Warning (dev) at
/usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
Call Stack (most recent call first):
CMakeLists.txt:95 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
-- Checking for one of the modules 'craypetsc_real;petsc;PETSc'
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of PetscInt
-- Check size of PetscInt - failed
-- Checking for one of the modules 'crayslepc_real;slepc;SLEPc'
-- Testing disabled
-- Configuring done (1.2s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu
PETSC_DIR=/usr/lib/petscdir/petsc64-3.21/x86_64-linux-gnu-real SLEPC_DIR=/usr/lib/slepcdir/slepc64-3.21/x86_64-linux-gnu-real
dh_auto_configure --builddir=obj-x86_64-linux-gnu-64 -- -D CMAKE_BUILD_TYPE:STRING=Release -D BUILD_SHARED_LIBS:BOOL=ON -D
USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D CMAKE_SKIP_RPATH:BOOL=ON -D
CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D CMAKE_CXX_FLAGS:STRING="-fpermissive
-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat
-Werror=format-security -fcf-protection" /<<PKGBUILDDIR>>/ -DLIB_NAME_EXT="64"
-DDOLFIN_LIB_NAME_EXT="64"
cd obj-x86_64-linux-gnu-64 && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake
-DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var
-DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON
-DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix
Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -D CMAKE_BUILD_TYPE:STRING=Release -D
BUILD_SHARED_LIBS:BOOL=ON -D USE_SYSTEM_CGAL:BOOL=ON -D USE_SYSTEM_TETGEN:BOOL=ON -D ENABLE_MSHRABLE:BOOL=ON -D
CMAKE_SKIP_RPATH:BOOL=ON -D CMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF -D INSTALL_LIB_DIR:PATH=lib/x86_64-linux-gnu -D
"CMAKE_CXX_FLAGS:STRING=-fpermissive -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection"
/<<BUILDDIR>>/mshr-2019.2.0\~git20230811.ff54a68\+dfsg1/ -DLIB_NAME_EXT=64 -DDOLFIN_LIB_NAME_EXT=64 ..
-- The C compiler identification is GNU 14.2.0
-- The CXX compiler identification is GNU 14.2.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Targeting Unix Makefiles
-- Using /usr/bin/c++ compiler.
-- Found GMP: /usr/lib/x86_64-linux-gnu/libgmp.so
-- Found MPFR: /usr/lib/x86_64-linux-gnu/libmpfr.so
CMake Warning (dev) at
/usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupBoost.cmake:20 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
Call Stack (most recent call first):
/usr/lib/x86_64-linux-gnu/cmake/CGAL/CGAL_SetupCGALDependencies.cmake:48
(include)
/usr/lib/x86_64-linux-gnu/cmake/CGAL/CGALConfig.cmake:169 (include)
CMakeLists.txt:17 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found suitable
version "1.83.0", minimum required is "1.72")
-- Boost include dirs: /usr/include
-- Boost libraries:
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Using gcc version 4 or later. Adding -frounding-math
CMake Warning (dev) at
/usr/share/cmake-3.30/Modules/FindPackageHandleStandardArgs.cmake:441 (message):
The package name passed to `find_package_handle_standard_args` (TETGEN)
does not match the name of the calling package (TetGen). This can lead to
problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
cmake/FindTetGen.cmake:31 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
CMakeLists.txt:32 (find_package)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found TETGEN: /usr/lib/x86_64-linux-gnu/libtet.so
CMake Warning (dev) at CMakeLists.txt:59 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found Boost: /usr/include (found version "1.83.0") found components: system
filesystem program_options
-- Found Eigen3: /usr/include/eigen3 (found suitable version "3.4.0", minimum required is
"3.1.0")
CMake Warning (dev) at
/usr/lib/x86_64-linux-gnu/cmake/dolfin/UseDOLFIN.cmake:34 (find_package):
Policy CMP0167 is not set: The FindBoost module is removed. Run "cmake
--help-policy CMP0167" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
Call Stack (most recent call first):
CMakeLists.txt:95 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1")
-- Checking for one of the modules 'craypetsc_real;petsc;PETSc'
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of PetscInt
-- Check size of PetscInt - failed
-- Checking for one of the modules 'crayslepc_real;slepc;SLEPc'
-- Testing disabled
-- Configuring done (1.2s)
-- Generating done (0.0s)
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
FETCHCONTENT_FULLY_DISCONNECTED
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu-64
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
py3versions: no X-Python3-Version in control file, using supported versions
PETSC_DIR=/usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real
SLEPC_DIR=/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real dh_auto_build
--builddir=obj-x86_64-linux-gnu
cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install
--strip-program=true" VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
/usr/bin/cmake -S"/<<PKGBUILDDIR>>" -B"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu"
--check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles"
"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks"
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
cd "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/<<PKGBUILDDIR>>" "/<<PKGBUILDDIR>>"
"/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu" "/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/CMakeFiles/mshr.dir/DependInfo.cmake"
"--color="
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make -f CMakeFiles/mshr.dir/build.make CMakeFiles/mshr.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
[ 4%] Building CXX object CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
-DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/<<PKGBUILDDIR>>/include" -I/include -isystem
/usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -MF
CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o.d -o CMakeFiles/mshr.dir/src/ASCFileReader.cpp.o -c
"/<<PKGBUILDDIR>>/src/ASCFileReader.cpp"
[ 9%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
-DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/<<PKGBUILDDIR>>/include" -I/include -isystem
/usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -MF
CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain2D.cpp.o -c
"/<<PKGBUILDDIR>>/src/CSGCGALDomain2D.cpp"
[ 13%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
-DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/<<PKGBUILDDIR>>/include" -I/include -isystem
/usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -MF
CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALDomain3D.cpp.o -c
"/<<PKGBUILDDIR>>/src/CSGCGALDomain3D.cpp"
In file included from /usr/include/CGAL/AABB_traits.h:19,
from /<<PKGBUILDDIR>>/src/CSGCGALDomain3D.cpp:57:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /<<PKGBUILDDIR>>/src/CSGCGALDomain3D.cpp:33:
/<<PKGBUILDDIR>>/src/Polyhedron_utils.h: In static member function ‘static bool
mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename
Polyhedron::Halfedge_handle, bool, bool)’:
/<<PKGBUILDDIR>>/src/Polyhedron_utils.h:855:39: warning: ‘No_intersection_tag’
is deprecated [-Wdeprecated-declarations]
855 | typedef CGAL::No_intersection_tag Itag;
| ^~~~
In file included from
/usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20,
from /<<PKGBUILDDIR>>/src/Polyhedron_utils.h:32:
/usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here
49 | struct CGAL_DEPRECATED No_intersection_tag :
| ^~~~~~~~~~~~~~~~~~~
/usr/include/CGAL/Installation/internal/deprecation_warning.h: At global scope:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/AABB_traits.h>` is deprecated. Please use
`<CGAL/AABB_traits_3.h>` instead. ’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
[ 18%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
-DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/<<PKGBUILDDIR>>/include" -I/include -isystem
/usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -MF
CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o.d -o CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator2D.cpp.o -c
"/<<PKGBUILDDIR>>/src/CSGCGALMeshGenerator2D.cpp"
[ 22%] Building CXX object CMakeFiles/mshr.dir/src/CSGCGALMeshGenerator3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
-DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/<<PKGBUILDDIR>>/include" -I/include -isystem
/usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
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"/<<PKGBUILDDIR>>/src/CSGCGALMeshGenerator3D.cpp"
In file included from
/<<PKGBUILDDIR>>/src/Polyhedral_multicomponent_mesh_domain_with_features_3.h:23,
from /<<PKGBUILDDIR>>/src/CSGCGALMeshGenerator3D.cpp:42:
/<<PKGBUILDDIR>>/src/Polyhedron_utils.h: In static member function ‘static bool
mshr::PolyhedronUtils::triangulate_polygon_3d(Polyhedron&, typename
Polyhedron::Halfedge_handle, bool, bool)’:
/<<PKGBUILDDIR>>/src/Polyhedron_utils.h:855:39: warning: ‘No_intersection_tag’
is deprecated [-Wdeprecated-declarations]
855 | typedef CGAL::No_intersection_tag Itag;
| ^~~~
In file included from
/usr/include/CGAL/Constrained_Delaunay_triangulation_2.h:20,
from /<<PKGBUILDDIR>>/src/Polyhedron_utils.h:32:
/usr/include/CGAL/Constrained_triangulation_2.h:49:24: note: declared here
49 | struct CGAL_DEPRECATED No_intersection_tag :
| ^~~~~~~~~~~~~~~~~~~
[ 27%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometries3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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"/<<PKGBUILDDIR>>/src/CSGGeometries3D.cpp"
[ 31%] Building CXX object CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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-o CMakeFiles/mshr.dir/src/CSGGeometry.cpp.o -c "/<<PKGBUILDDIR>>/src/CSGGeometry.cpp"
[ 36%] Building CXX object CMakeFiles/mshr.dir/src/CSGOperators.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -fpermissive -g -O2
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-o CMakeFiles/mshr.dir/src/CSGOperators.cpp.o -c "/<<PKGBUILDDIR>>/src/CSGOperators.cpp"
[ 40%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives2D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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"/<<PKGBUILDDIR>>/src/CSGPrimitives2D.cpp"
[ 45%] Building CXX object CMakeFiles/mshr.dir/src/CSGPrimitives3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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"/<<PKGBUILDDIR>>/src/CSGPrimitives3D.cpp"
[ 50%] Building CXX object CMakeFiles/mshr.dir/src/DolfinMeshUtils.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
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"/<<PKGBUILDDIR>>/src/DolfinMeshUtils.cpp"
[ 54%] Building CXX object CMakeFiles/mshr.dir/src/GlobalInitializer.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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[ 59%] Building CXX object CMakeFiles/mshr.dir/src/MeshGenerator.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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[ 63%] Building CXX object CMakeFiles/mshr.dir/src/Meshes.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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[ 68%] Building CXX object CMakeFiles/mshr.dir/src/OFFFileReader.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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[ 72%] Building CXX object CMakeFiles/mshr.dir/src/STLFileReader.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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[ 77%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceConsistency.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -fpermissive -g -O2
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"/<<PKGBUILDDIR>>/src/SurfaceConsistency.cpp"
[ 81%] Building CXX object CMakeFiles/mshr.dir/src/SurfaceReconstruction.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
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/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -fpermissive -g -O2
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"/<<PKGBUILDDIR>>/src/SurfaceReconstruction.cpp"
In file included from
/usr/include/CGAL/Surface_mesh_default_triangulation_3.h:21,
from /<<PKGBUILDDIR>>/src/SurfaceReconstruction.cpp:26:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Robust_circumcenter_traits_3.h:26,
from
/usr/include/CGAL/Surface_mesh_default_triangulation_3.h:27:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:20,
from
/usr/include/CGAL/Surface_mesh_default_triangulation_3.h:33:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from
/usr/include/CGAL/Complex_2_in_triangulation_vertex_base_3.h:24,
from /usr/include/CGAL/Surface_mesh_vertex_base_3.h:23:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_cell_base_3.h:20,
from
/usr/include/CGAL/Surface_mesh_default_triangulation_3.h:34:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from
/usr/include/CGAL/Complex_2_in_triangulation_cell_base_3.h:23,
from /usr/include/CGAL/Surface_mesh_cell_base_3.h:22:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/make_surface_mesh.h:20,
from /<<PKGBUILDDIR>>/src/SurfaceReconstruction.cpp:27:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher_generator.h:21,
from /usr/include/CGAL/make_surface_mesh.h:23:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:28,
from /usr/include/CGAL/Surface_mesher_generator.h:23:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Verbose_flag.h:21,
from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:42:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Types_generators.h:21,
from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:43:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Profile_counter.h:24,
from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:44:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Profile_timer.h:24,
from /usr/include/CGAL/Surface_mesher/Surface_mesher.h:45:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from
/usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:22,
from /usr/include/CGAL/Surface_mesher_generator.h:24:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from
/usr/include/CGAL/Surface_mesher/Surface_mesher_regular_edges.h:21,
from
/usr/include/CGAL/Surface_mesher/Surface_mesher_manifold.h:26:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from
/usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level.h:21,
from /usr/include/CGAL/Surface_mesher_generator.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from
/usr/include/CGAL/Surface_mesher/Surface_mesher_visitor.h:22,
from /usr/include/CGAL/Surface_mesher_generator.h:26:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from
/usr/include/CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h:22,
from /usr/include/CGAL/Surface_mesher_generator.h:27:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:20,
from /usr/include/CGAL/Surface_mesher_generator.h:28:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:21,
from /usr/include/CGAL/Surface_mesh_traits_generator_3.h:22:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Null_oracle_visitor.h:22,
from /usr/include/CGAL/Surface_mesher/Sphere_oracle_3.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from
/usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:21,
from /usr/include/CGAL/Surface_mesher_generator.h:29:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Complex_2_in_triangulation_3.h:21,
from
/usr/include/CGAL/Surface_mesh_complex_2_in_triangulation_3.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:20,
from /usr/include/CGAL/make_surface_mesh.h:30:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Surface_mesher/Standard_criteria.h:22,
from /usr/include/CGAL/Surface_mesh_default_criteria_3.h:22:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from /usr/include/CGAL/Implicit_surface_3.h:20,
from /<<PKGBUILDDIR>>/src/SurfaceReconstruction.cpp:28:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
In file included from
/usr/include/CGAL/Surface_mesher/Implicit_surface_oracle_3.h:22,
from /usr/include/CGAL/Implicit_surface_3.h:25:
/usr/include/CGAL/Installation/internal/deprecation_warning.h:80:6: warning: #warning
"A deprecated header has been included." [-Wcpp]
80 | # warning "A deprecated header has been included."
| ^~~~~~~
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesh_default_triangulation_3.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Robust_circumcenter_traits_3.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesh_vertex_base_3.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header
`<CGAL/Complex_2_in_triangulation_vertex_base_3.h>` is deprecated. Additional
information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/)
should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesh_cell_base_3.h>` is deprecated.
Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Complex_2_in_triangulation_cell_base_3.h>`
is deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/make_surface_mesh.h>` is deprecated.
Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher_generator.h>` is deprecated.
Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher/Verbose_flag.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher/Types_generators.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher/Profile_counter.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher/Profile_timer.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_manifold.h>`
is deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header
`<CGAL/Surface_mesher/Surface_mesher_regular_edges.h>` is deprecated.
Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header
`<CGAL/Surface_mesher/Surface_mesher_edges_level.h>` is deprecated. Additional
information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/)
should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher/Surface_mesher_visitor.h>`
is deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header
`<CGAL/Surface_mesher/Surface_mesher_edges_level_visitor.h>` is deprecated.
Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesh_traits_generator_3.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher/Sphere_oracle_3.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher/Null_oracle_visitor.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header
`<CGAL/Surface_mesh_complex_2_in_triangulation_3.h>` is deprecated. Additional
information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/)
should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Complex_2_in_triangulation_3.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesh_default_criteria_3.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Surface_mesher/Standard_criteria.h>` is
deprecated. Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header `<CGAL/Implicit_surface_3.h>` is deprecated.
Additional information: The 3D Mesh Generation package (see
https://doc.cgal.org/latest/Mesh_3/) should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
/usr/include/CGAL/Installation/internal/deprecation_warning.h:81:54: note: ‘#pragma
message: Warning: The header
`<CGAL/Surface_mesher/Implicit_surface_oracle_3.h>` is deprecated. Additional
information: The 3D Mesh Generation package (see https://doc.cgal.org/latest/Mesh_3/)
should be used instead.’
81 | # pragma message (CGAL_INTERNAL_DEPRECATED_MESSAGE)
| ^
[ 86%] Building CXX object CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o
/usr/bin/c++ -DCGAL_HEADER_ONLY -DDOLFIN_VERSION=\"2019.2.0.64.dev0\" -DHAS_CHOLMOD -DHAS_HDF5 -DHAS_MPI -DHAS_PETSC -DHAS_SCOTCH
-DHAS_SLEPC -DHAS_UMFPACK -DHAS_ZLIB -DNDEBUG -DTETLIBRARY -Dmshr_EXPORTS -I"/<<PKGBUILDDIR>>/include" -I/include -isystem
/usr/include/eigen3 -isystem /usr/lib/python3/dist-packages/ffc/backends/ufc -isystem /usr/include/hdf5/openmpi -isystem
/usr/lib/x86_64-linux-gnu/openmpi/include -isystem /usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -isystem
/usr/lib/slepcdir/slepc3.21/x86_64-linux-gnu-real/include -isystem /usr/lib/petscdir/petsc3.21/x86_64-linux-gnu-real/include -fpermissive -g -O2
-ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security
-fcf-protection -O3 -DNDEBUG -std=c++17 -fPIC -MD -MT CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -MF
CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o.d -o CMakeFiles/mshr.dir/src/TetgenMeshGenerator3D.cpp.o -c
"/<<PKGBUILDDIR>>/src/TetgenMeshGenerator3D.cpp"
make[4]: *** No rule to make target
'/usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so', needed by
'libmshr.so.2019.2.0.dev0'. Stop.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[3]: *** [CMakeFiles/Makefile2:105: CMakeFiles/mshr.dir/all] Error 2
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
make[2]: *** [Makefile:139: all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
dh_auto_build: error: cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install
--strip-program=true" VERBOSE=1 returned exit code 2
make[1]: *** [debian/rules:108: override_dh_auto_build] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:92: build] Error 2
dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
--------------------------------------------------------------------------------
The above is just how the build ends and not necessarily the most relevant part.
If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202410/
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and affects, so that this is still visible in the BTS web
page for this package.
Thanks.
--
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