Source: yade Version: 2020.01a-6 Severity: important Tags: ftbfs User: [email protected] Usertags: sphinx2.4
Hi, yade fails to build with Sphinx 2.4, currently available in experimental. Relevant part (hopefully): > make[3]: Entering directory '/<<PKGBUILDDIR>>/debian/build' > make[3]: Nothing to be done for 'preinstall'. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build' > Install the project... > /usr/bin/cmake -P cmake_install.cmake > -- Install configuration: "None" > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/yade-batch > -- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/yade > CMake Error: failed to create symbolic link '/usr/bin/yade.py': permission > denied > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/config.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/libVersions.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/__init__.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/DEM-PFV-check.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkAvoidSelfInteractionMask.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkBlockGen.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkCapillaryModels.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkClumpHopper.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkColliderConstantness.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkColliderCorrectness.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkDEM-PFVPressureInjection.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkGravity.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkJCFpm.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkLiquidMigration.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkList.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkLubrication.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkLubricationWithRoughness.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkMPI.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkPolyhedraCrush.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkPotentialBlocks.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkPotentialParticles.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkSaveLoadClumps.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkTestDummy.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkTestTriax.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkViscElEng.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkViscElPM.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkViscElPM2.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkWeight.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/checkWirePM.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/check_TwoPhaseFlowEngine_PressureInjection.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/gui/testGui.sh > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/gui/testGuiEmpty.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/gui/testGuiSimple.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/testGuiHelper.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/data/100spheres > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/data/WallStressesCheckTest > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/data/checkColider.txt > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/data/checkColliderCorrect.txt > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/data/checkJCFpm.spheres > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/data/checkTestTriax.spheres > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/data/joints.csv > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/share/doc/yade/img/yade-logo-note.png > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/boot.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/boot.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts:/usr/lib/x86_64-linux-gnu/openmpi/lib" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/libyade.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/libyade.so" to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts:/usr/lib/x86_64-linux-gnu/openmpi/lib" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/_GLViewer.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/_GLViewer.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/Inspector.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/SerializableEditor.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/__init__.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/img_rc.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/ui_controller.py > -- Up-to-date: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/_GLViewer.so > -- Up-to-date: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/Inspector.py > -- Up-to-date: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/SerializableEditor.py > -- Up-to-date: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/__init__.py > -- Up-to-date: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/img_rc.py > -- Up-to-date: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/qt/ui_controller.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/gts/__init__.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/gts/pygts.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/gts/_gts.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/gts/_gts.so" to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_extraDocs.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/bisectionDecomposition.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/bodiesHandling.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/coloring.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/deformableelementsutils.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/domaindecomposition.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/export.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/geom.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/gridpfacet.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/linterpolation.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/log.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/mpy.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/params.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/polyhedra_utils.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/post2d.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/remote.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/runtime.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/system.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/timing.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/utils.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/ymport.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/pack.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/mtTkinter.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/__init__.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/clump.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/cohesive-chain.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/core.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/dummyTest.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/engines.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/libVersions.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/pbc.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/testColliderByGiulia.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/utilsModule.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/wrapper.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/performance/checkPerf.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/tests/checks/performance/performance.db > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/FEMxDEM/mpipool.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/FEMxDEM/msFEM2D.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/FEMxDEM/msFEM3D.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/FEMxDEM/msFEMup.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/FEMxDEM/saveGauss.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/FEMxDEM/simDEM.py > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_libVersions.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_libVersions.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts:/usr/lib/x86_64-linux-gnu/openmpi/lib" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_log.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_log.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts:/usr/lib/x86_64-linux-gnu/openmpi/lib" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/WeightedAverage2d.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/WeightedAverage2d.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_utils.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_utils.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts:/usr/lib/x86_64-linux-gnu/openmpi/lib" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_polyhedra_utils.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_polyhedra_utils.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_packPredicates.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_packPredicates.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts:/usr/lib/x86_64-linux-gnu/openmpi/lib" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_packSpheres.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_packSpheres.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts:/usr/lib/x86_64-linux-gnu/openmpi/lib" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_packObb.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_packObb.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/wrapper.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/wrapper.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts:/usr/lib/x86_64-linux-gnu/openmpi/lib" > -- Installing: > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_customConverters.so > -- Set runtime path of > "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/_customConverters.so" > to > "/usr/lib/x86_64-linux-gnu/yade:/usr/lib/x86_64-linux-gnu/yade/py:/usr/lib/x86_64-linux-gnu/yade/py/yade/:/usr/lib/x86_64-linux-gnu/yade/py/yade/qt:/usr/lib/x86_64-linux-gnu/yade/py/gts:/usr/lib/x86_64-linux-gnu/openmpi/lib" > make[2]: Leaving directory '/<<PKGBUILDDIR>>/debian/build' > # generate manpages > help2man /<<PKGBUILDDIR>>/debian/tmp/usr/bin/yade > yade.1 > help2man /<<PKGBUILDDIR>>/debian/tmp/usr/bin/yade-batch > yade-batch.1 > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/yade --test > Using python version: 3.8.2 (default, Feb 25 2020, 13:04:52) > [GCC 9.2.1 20200220] > testDummySomething (yade.tests.dummyTest.TestDummy) ... ok > testDummySomethingElse (yade.tests.dummyTest.TestDummy) ... ok > testMatrix3 (yade.TestEigenWrapper) > Math: Matrix3 operations ... ok > testQuaternion (yade.TestEigenWrapper) > Math: Quaternion operations ... ok > testVector2 (yade.TestEigenWrapper) > Math: Vector2 operations ... ok > testVector3 (yade.TestEigenWrapper) > Math: Vector3 operations ... ok > testClassCtors (yade.TestObjectInstantiation) > Core: correct types are instantiated ... ok > testDispatcherCtor (yade.TestObjectInstantiation) > Core: dispatcher ctors with functors ... ok > testHidden (yade.TestObjectInstantiation) > Core: Attr::hidden ... ok > testInteractionLoopCtor (yade.TestObjectInstantiation) > Core: InteractionLoop special ctor ... ok > testInvalidAttr (yade.TestObjectInstantiation) > Core: invalid attribute access raises AttributeError ... ok > testNoSave (yade.TestObjectInstantiation) > Core: Attr::noSave ... ok > testParallelEngineCtor (yade.TestObjectInstantiation) > Core: ParallelEngine special ctor ... ok > testRootDerivedCtors_attrs_few (yade.TestObjectInstantiation) > Core: class ctor's attributes ... ok > testTriggerPostLoad (yade.TestObjectInstantiation) > Core: Attr::triggerPostLoad ... ok > testWrongFunctorType (yade.TestObjectInstantiation) > Core: dispatcher and functor type mismatch is detected ... ok > testErase (yade.TestBodies) > Bodies: erased bodies are None in python ... ok > testErasedAndNewlyCreatedSphere (yade.TestBodies) > Bodies: The bug is described in LP:1001194. If the new body was created after > deletion of previous, it has no bounding box ... ok > testErasedIterate (yade.TestBodies) > Bodies: Iterator silently skips erased ones ... ok > testIterate (yade.TestBodies) > Bodies: Iteration ... ok > testLen (yade.TestBodies) > Bodies: len(O.bodies) ... ok > testNegativeIndex (yade.TestBodies) > Bodies: Negative index counts backwards (like python sequences). ... ok > testSaveAllClasses (yade.TestIO) > I/O: All classes can be saved and loaded with boost::serialization ... > Entered the initialization functionEntered the initialization > functionWARNING: cannot open files used for capillary law, all forces will be > null. Instructions on how to download and install them is found here : > https://yade-dem.org/wiki/CapillaryTriaxialTest. > ok > testEraseBodiesInInteraction (yade.TestInteractions) ... ok > testDead (yade.TestLoop) > Loop: dead engines are not run ... ok > testEnginesModificationInsideLoop (yade.TestLoop) > Loop: O.engines can be modified inside the loop transparently. ... ok > testSubstepping (yade.TestLoop) > Loop: substepping ... ok > testMatchMakerCollisions (yade.TestMatchMaker) ... ok > testMaterialReturnsState (yade.TestMaterialStateAssociativity) > Material+State: CpmMat returns CpmState when asked for newAssocState ... ok > testThrowsAtBadCombination (yade.TestMaterialStateAssociativity) > Material+State: throws when body has material and state that don't work > together. ... ok > testThrowsAtNullState (yade.TestMaterialStateAssociativity) > Material+State: throws when body has material but NULL state. ... ok > testAccess (yade.TestMaterials) > Material: find by index or label; KeyError raised for invalid label. ... ok > testIterate (yade.TestMaterials) > Material: iteration over O.materials ... ok > testLen (yade.TestMaterials) > Material: len(O.materials) ... ok > testNegativeIndex (yade.TestMaterials) > Material: negative index counts backwards. ... ok > testShared (yade.TestMaterials) > Material: shared_ptr's makes change in material immediate everywhere ... ok > testSharedAfterReload (yade.TestMaterials) > Material: shared_ptr's are preserved when saving/loading ... ok > testDegenerate (yade.TestPBC) > PBC: degenerate cell raises exception ... ok > testHomotheticResizeVel (yade.TestPBC) > PBC: homothetic cell deformation adjusts particle velocity ... ok > testKineticEnergy (yade.TestPBC) > PBC: utils.kineticEnergy considers only fluctuation velocity, not the > velocity gradient ... ok > testL3GeomIncidentVelocity (yade.TestPBC) > PBC: L3Geom computes incident velocity correctly ... ok > testScGeomIncidentVelocity (yade.TestPBC) > PBC: ScGeom computes incident velocity correctly ... ok > testSetBox (yade.TestPBC) > PBC: setBox modifies hSize correctly ... ok > testTrsfChange (yade.TestPBC) > PBC: chaing trsf changes hSize0, but does not modify hSize ... ok > testVelGrad (yade.TestPBC) > PBC: velGrad changes hSize, accumulates in trsf ... ok > testConsistency (yade.TestSimpleClump) > Clump: ids and flags consistency ... ok > testStaticProperties (yade.TestSimpleClump) > Clump: mass, centroid, intertia ... ok > testVelocity (yade.TestSimpleClump) > Clump: velocities of member assigned by NewtonIntegrator ... ok > testMotion (yade.tests.cohesive-chain.TestCohesiveChain) > CohesiveChain: velocity/positions tested in transient dynamics and > equilibrium state ... ok > testKinematicEngines (yade.TestKinematicEngines) > Engines: kinematic engines ... ok > testLabels (yade.TestLabelsOfEngines) ... ok > testUserCreatedInteraction (yade.TestUtils) ... ok > testLibVersions (yade.tests.libVersions.TestLibVersions) ... cmake versions: > {'cmake': [(3, 16, 3), '3.16.3'], 'compiler': [(9, 3, 0), '/usr/bin/c++ > 9.3.0'], 'boost': [(1, 67, 0), '106700'], 'freeglut': [(2, 8, 1), '2.8.1'], > 'python': [(3, 8, 2), '3.8.2'], 'eigen': [(3, 3, 7), '3.3.7'], 'vtk': [(6, 3, > 0), '6.3.0'], 'suitesparse': [(5, 7, 1), '5.7.1'], 'mpi': [(3, 1, 0), '3.1'], > 'ipython': [(7, 13, 0), '7.13.0'], 'sphinx': [(2, 4, 3), '2.4.3-final-0'], > 'mpi4py': [(3, 0, 3), '3.0.3']} > C++ versions: {'compiler': [(9, 3, 0), 'gcc 9.3.0'], 'boost': [(1, 67, 0), > '1.67.0'], 'qt': [(5, 12, 5), '5.12.5'], 'gl': [(2019, 8, 5), '20190805'], > 'qglviewer': [(2, 6, 3), '2.6.3'], 'python': [(3, 8, 2), '3.8.2'], 'eigen': > [(3, 3, 7), '3.3.7'], 'sqlite': [(3, 31, 1), '3.31.1'], 'vtk': [(6, 3, 0), > '6.3.0'], 'cgal': [(5, 0, 2), '5.0.2'], 'suitesparse': [(5, 7, 1), '5.7.1'], > 'openblas': [(0, 0, 0), ' OpenBLAS 0.3.9 '], 'metis': [(5, 1, 0), '5.1.0'], > 'mpi': [(4, 0, 2), 'ompi:4.0.2'], 'clp': []} > > > Yade version : 2020.01a > Yade features : BoostLog Odeint VTK OpenMP GTS GUI-Qt5 CGAL PFVFLOW PFVFLOW > LINSOLV MPI TWOPHASEFLOW SPH FEMLIKE GL2PS LBMFLOW THERMAL PotentialParticles > Yade config dir: ~/.yade > > Libraries used : > > +---------------+----------------------+--------------------+ > | library | cmake | C++ | > +===============+======================+====================+ > | boost | 106700 | 1.67.0 | > +---------------+----------------------+--------------------+ > | cgal | | 5.0.2 | > +---------------+----------------------+--------------------+ > | cmake | 3.16.3 | | > +---------------+----------------------+--------------------+ > | compiler | /usr/bin/c++ 9.3.0 | gcc 9.3.0 | > +---------------+----------------------+--------------------+ > | eigen | 3.3.7 | 3.3.7 | > +---------------+----------------------+--------------------+ > | freeglut | 2.8.1 | | > +---------------+----------------------+--------------------+ > | gl | | 20190805 | > +---------------+----------------------+--------------------+ > | ipython | 7.13.0 | | > +---------------+----------------------+--------------------+ > | metis | | 5.1.0 | > +---------------+----------------------+--------------------+ > | mpi | 3.1 | ompi:4.0.2 | > +---------------+----------------------+--------------------+ > | mpi4py | 3.0.3 | | > +---------------+----------------------+--------------------+ > | openblas | | OpenBLAS 0.3.9 | > +---------------+----------------------+--------------------+ > | python | 3.8.2 | 3.8.2 | > +---------------+----------------------+--------------------+ > | qglviewer | | 2.6.3 | > +---------------+----------------------+--------------------+ > | qt | | 5.12.5 | > +---------------+----------------------+--------------------+ > | sphinx | 2.4.3-final-0 | | > +---------------+----------------------+--------------------+ > | sqlite | | 3.31.1 | > +---------------+----------------------+--------------------+ > | suitesparse | 5.7.1 | 5.7.1 | > +---------------+----------------------+--------------------+ > | vtk | 6.3.0 | 6.3.0 | > +---------------+----------------------+--------------------+ > > Linux version: Debian GNU/Linux bullseye/sid > > > ``` > Yade version : 2020.01a > Yade features : BoostLog Odeint VTK OpenMP GTS GUI-Qt5 CGAL PFVFLOW PFVFLOW > LINSOLV MPI TWOPHASEFLOW SPH FEMLIKE GL2PS LBMFLOW THERMAL PotentialParticles > Yade config dir: ~/.yade > ``` > > Libraries used : > > | library | cmake | C++ | > | ------------- | -------------------- | ------------------ | > | boost | 106700 | 1.67.0 | > | cgal | | 5.0.2 | > | cmake | 3.16.3 | | > | compiler | /usr/bin/c++ 9.3.0 | gcc 9.3.0 | > | eigen | 3.3.7 | 3.3.7 | > | freeglut | 2.8.1 | | > | gl | | 20190805 | > | ipython | 7.13.0 | | > | metis | | 5.1.0 | > | mpi | 3.1 | ompi:4.0.2 | > | mpi4py | 3.0.3 | | > | openblas | | OpenBLAS 0.3.9 | > | python | 3.8.2 | 3.8.2 | > | qglviewer | | 2.6.3 | > | qt | | 5.12.5 | > | sphinx | 2.4.3-final-0 | | > | sqlite | | 3.31.1 | > | suitesparse | 5.7.1 | 5.7.1 | > | vtk | 6.3.0 | 6.3.0 | > > Linux version: Debian GNU/Linux bullseye/sid > > compiler version reported by by cmake is [(9, 3, 0), '/usr/bin/c++ 9.3.0'] > and by C++ is [(9, 3, 0), 'gcc 9.3.0'] > boost version reported by by cmake is [(1, 67, 0), '106700'] and by C++ is > [(1, 67, 0), '1.67.0'] > python version reported by by cmake is [(3, 8, 2), '3.8.2'] and by C++ is > [(3, 8, 2), '3.8.2'] > eigen version reported by by cmake is [(3, 3, 7), '3.3.7'] and by C++ is > [(3, 3, 7), '3.3.7'] > vtk version reported by by cmake is [(6, 3, 0), '6.3.0'] and by C++ is > [(6, 3, 0), '6.3.0'] > suitesparse version reported by by cmake is [(5, 7, 1), '5.7.1'] and by C++ > is [(5, 7, 1), '5.7.1'] > mpi version reported by by cmake is [(3, 1, 0), '3.1'] and by C++ is [(4, > 0, 2), 'ompi:4.0.2'] > > [93m Warning: [0mmpi versions are different, CMAKE: (3, 1, 0) vs. C++: (4, > 0, 2) > Something suspicious is going on. Can you help with file > py/libVersions.py.in? > ok > SpherePack_toSimulation (yade.pack) > Doctest: yade.pack.SpherePack_toSimulation ... ok > addAutoData (yade.plot) > Doctest: yade.plot.addAutoData ... ok > addData (yade.plot) > Doctest: yade.plot.addData ... ok > plot (yade.plot) > Doctest: yade.plot.plot ... ok > saveDataTxt (yade.plot) > Doctest: yade.plot.saveDataTxt ... ok > SpherePWaveTimeStep (yade.utils) > Doctest: yade.utils.SpherePWaveTimeStep ... ok > saveVars (yade.utils) > Doctest: yade.utils.saveVars ... ok > sphere (yade.utils) > Doctest: yade.utils.sphere ... ok > typedEngine (yade.utils) > Doctest: yade.utils.typedEngine ... > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/gridpfacet.py:57: > UserWarning: [1;31mchainedCylinder is deprecated and will be removed in the > future, use GridConnection instead. See > examples/grids/CohesiveGridConnectionSphere.py.[1;0m > warnings.warn('\033[1;31mchainedCylinder is deprecated and will be removed > in the future, use GridConnection instead. See > examples/grids/CohesiveGridConnectionSphere.py.\033[1;0m',category=UserWarning) > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py:444: > MatplotlibDeprecationWarning: The 'verts' parameter of scatter() is > deprecated since Matplotlib 3.2 and will be removed two minor releases later. > If any parameter follows 'verts', they should be pass as keyword, not > positionally. > scatter=pylab.scatter(scatterPt[0] if not math.isnan(scatterPt[0]) else > 0,scatterPt[1] if not math.isnan(scatterPt[1]) else > 0,s=scatterSize,color=line.get_color(),**scatterMarkerKw) > ok > > ---------------------------------------------------------------------- > Ran 62 tests in 0.673s > > OK > [92m*** ALL TESTS PASSED ***[0m > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/yade --check > /<<PKGBUILDDIR>>/debian/tmp/usr/lib/x86_64-linux-gnu/yade/py/yade/plot.py:444: > MatplotlibDeprecationWarning: The 'verts' parameter of scatter() is > deprecated since Matplotlib 3.2 and will be removed two minor releases later. > If any parameter follows 'verts', they should be pass as keyword, not > positionally. > scatter=pylab.scatter(scatterPt[0] if not math.isnan(scatterPt[0]) else > 0,scatterPt[1] if not math.isnan(scatterPt[1]) else > 0,s=scatterSize,color=line.get_color(),**scatterMarkerKw) > Welcome to Yade 2020.01a > Using python version: 3.8.2 (default, Feb 25 2020, 13:04:52) > [GCC 9.2.1 20200220] > ################################### > running: check_TwoPhaseFlowEngine_PressureInjection.py > File ./vtk moved into /tmp/tmpm4auvkiq/ directory > File ./Test.txt moved into /tmp/tmpm4auvkiq/ directory > Status: success > ___________________________________ > ################################### > running: checkViscElPM.py > Status: success > ___________________________________ > ################################### > Skipping checkPolyhedraCrush.py, because it is in SkipScripts > ################################### > running: checkBlockGen.py > skip BlockGen check, PotentialBlocks not available > Status: success > ___________________________________ > ################################### > running: checkWirePM.py > Status: success > ___________________________________ > ################################### > running: checkPotentialParticles.py > Status: success > ___________________________________ > ################################### > running: checkViscElEng.py > Precalculated en value 0.736356797441 > Obtained en value 0.736356797441 > Status: success > ___________________________________ > ################################### > running: DEM-PFV-check.py > DEM-PFV: difference in permeability: 0.044067088852757945 vs. target > 0.040399916554 > DEM-PFV: difference in final pressure: 615.0495882420628 vs. target > 628.314160434 > DEM-PFV: difference in final deformation -0.002674645948106278 vs. target > -0.00258113045083 > Status: success > ___________________________________ > ################################### > running: checkTestTriax.py > File ./checkTest.yade moved into /tmp/tmp2wwpukw8/ directory > File ./_Unloaded_380_3.spheres moved into /tmp/tmp2wwpukw8/ directory > File ./_Unloaded_380_3.xml moved into /tmp/tmp2wwpukw8/ directory > File ./WallStresses moved into /tmp/tmp2wwpukw8/ directory > Status: success > ___________________________________ > ################################### > running: checkSaveLoadClumps.py > Kinetic energy OK 1.170364E-09 > Kinetic energy OK 1.157228E-01 > Kinetic energy OK 1.157460E-01 > Kinetic energy OK 1.180728E-01 > Status: success > ___________________________________ > ################################### > running: checkClumpHopper.py > Iter 10000: Total number of generated spheres 1448, removed particles 0, > current particles 1448, kinEnergy 13755.3 > Iter 20000: Total number of generated spheres 2896, removed particles 98, > current particles 2798, kinEnergy 32257.5 > Status: success > ___________________________________ > ################################### > running: checkDEM-PFVPressureInjection.py > File ./vtk moved into /tmp/tmp3kh_8fp_/ directory > File ./Test.txt moved into /tmp/tmp3kh_8fp_/ directory > Status: success > ___________________________________ > ################################### > running: checkPotentialBlocks.py > skip PotentialBlocks check, PotentialBlocks not available > Status: success > ___________________________________ > ################################### > running: checkGravity.py > Status: success > ___________________________________ > ################################### > running: checkColliderConstantness.py > checkColliderConstantness for InsertionSortCollider > Status: success > ___________________________________ > ################################### > running: checkTestDummy.py > checkTest mechanism > Status: success > ___________________________________ > ################################### > Skipping checkMPI.py, because it is in SkipScripts > ################################### > running: checkViscElPM2.py > Status: success > ___________________________________ > ################################### > running: checkLubrication.py > Status: success > ___________________________________ > ################################### > running: checkAvoidSelfInteractionMask.py > testing collider.avoidSelfInteractionMask > 0 bb br gg gr rr > 1 bb br gr > 2 br gg gr > 3 br gr > Status: success > ___________________________________ > ################################### > running: checkCapillaryModels.py > Status: success > ___________________________________ > ################################### > running: checkLubricationWithRoughness.py > Status: success > ___________________________________ > ################################### > Skipping checkList.py, because it is in SkipScripts > ################################### > Skipping checkJCFpm.py, because it is in SkipScripts > ################################### > running: checkLiquidMigration.py > This checkLiquidMigration.py cannot be executed because LIQMIGRATION is > disabled > Status: success > ___________________________________ > ################################### > running: checkWeight.py > Precalculated weight 756.093387 > Obtained weight 756.093387 > Status: success > ___________________________________ > ################################### > running: checkColliderCorrectness.py > checkColliderCorrectness for InsertionSortCollider > Status: success > ___________________________________ > [92m*** ALL CHECKS PASSED ***[0m > dh_numpy3 > #Generate docs > cd /<<PKGBUILDDIR>>/doc/sphinx && PYTHONPATH=. > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/yade yadeSphinx.py html && PYTHONPATH=. > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/yade yadeSphinx.py latex && cd > _build/latex && xelatex Yade.tex && xelatex Yade.tex && xelatex Yade.tex > Welcome to Yade 2020.01a > Using python version: 3.8.2 (default, Feb 25 2020, 13:04:52) > [GCC 9.2.1 20200220] > Warning: no X rendering available (see > https://bbs.archlinux.org/viewtopic.php?id=13189) > XMLRPC info provider on http://localhost:21000 > TCP python prompt on localhost:9000, auth cookie `ucesas' > Running script yadeSphinx.py > Running yadeSphinx.py with writer == html > Welcome to Yade 2020.01a > Using python version: 3.8.2 (default, Feb 25 2020, 13:04:52) > [GCC 9.2.1 20200220] > Warning: no X rendering available (see > https://bbs.archlinux.org/viewtopic.php?id=13189) > XMLRPC info provider on http://localhost:21000 > TCP python prompt on localhost:9000, auth cookie `suykac' > Running script yadeSphinx.py > Running yadeSphinx.py with writer == latex > This is XeTeX, Version 3.14159265-2.6-0.999991 (TeX Live 2019/Debian) > (preloaded format=xelatex) > restricted \write18 enabled. > entering extended mode > ! I can't find file `Yade.tex'. > <*> Yade.tex > > (Press Enter to retry, or Control-D to exit) > Please type another input file name: > ! Emergency stop. > <*> Yade.tex > > No pages of output. > Transcript written on texput.log. > make[1]: *** [debian/rules:63: override_dh_auto_install] Error 1 The full build log is available from: http://qa-logs.debian.net/2020/03/26/yade_2020.01a-6_unstable_sphinx243.log Please see [1] for Sphinx changelog, which may give a hint of what changes in Sphinx caused this error. Also see [2] for the list of deprecated/removed APIs and possible alternatives to them. Sphinx 2.4 is going to be uploaded to unstable in a couple of weeks. When that happens, the severity of this bug will be bumped to serious. In case you have questions, please Cc [email protected] on reply. [1]: https://www.sphinx-doc.org/en/2.0/changes.html [2]: https://www.sphinx-doc.org/en/2.0/extdev/deprecated.html#dev-deprecated-apis A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures. -- debian-science-maintainers mailing list [email protected] https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-science-maintainers
