Your message dated Thu, 19 Jul 2018 04:34:37 +0000
with message-id <[email protected]>
and subject line Bug#904020: fixed in petsc 3.9.3+dfsg1-3
has caused the Debian Bug report #904020,
regarding libpetsc-real3.9-dev: dependency on libopenmpi-dev not strict enough
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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904020: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=904020
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--- Begin Message ---
Package: libpetsc-real3.9-dev
Version: 3.9.3+dfsg1-2
Dear Drew,
On 17-07-18 13:20, Graham Inggs wrote:
> Hi Drew
>
>> On Tue, 17 Jul 2018, Drew Parsons wrote:
>>> The configuration of ci.debian.org is not consistent. A failing test
>>> of deal.ii is marked on
>>> https://ci.debian.net/packages/d/deal.ii/testing/amd64/
>>> as triggered by petsc/3.9.3+dfsg1-2, but the test log shows that in
>>> fact libpetsc-real3.8-dev is used for the test
>>> (i.e. petsc/3.8.4+dfsg1-2+b2). So unsurprisingly the test fails, which
>>> disrupts migration of the new petsc 3.9 (throwing it out to 10 days
>>> instead of 5). The failure itself occurs since the different petsc were
>>> built against different openmpi.
>
>>From the times in the logs, it appears that the test was run before
> deal.ii's binNMU happened [1].
> So the delay is only temporary.
>
> As soon as the test is successful, the migration delay will disappear.
>
> I've requested a retry for that test, so it should happen soon.
Although Graham was right with his timing regarding binNMU of deal.ii,
there is more going on. I really don't want to offend you, but I wonder
if you read the actual error message carefully? (It took Graham and me
quite some time to figure this out and to understand it).
'''
PETSc was configured with one OpenMPI mpi.h version but now appears to
be compiling using a different OpenMPI mpi.h version
'''
This message comes from petsc, so, whatever header file got installed
was blessed by petsc.
Apart from petsc/3.8.4+dfsg1-2+b2 also petsc/3.9.3+dfsg1-2 packages were
installed (so both of them), so I think the trigger did it's job.
I believe that the current failure is really pointing at a bug in the
dependencies of libpetsc-real3.9-dev which probably need tighter
restrictions on libopenmpi-dev looking at the message. If
libpetsc-real3.9-dev would require libopenmpi-dev from unstable, I
believe everything would be all right. I'll trigger a test like the one
that currently fails, but with libopenmpi-dev from unstable to prove my
hypothesis.
Paul
signature.asc
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: petsc
Source-Version: 3.9.3+dfsg1-3
We believe that the bug you reported is fixed in the latest version of
petsc, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Drew Parsons <[email protected]> (supplier of updated petsc package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Thu, 19 Jul 2018 11:02:44 +0800
Source: petsc
Binary: libpetsc-real3.9-dev petsc-dev libpetsc-real3.9
libpetsc3.9-dev-examples libpetsc-real3.9-dbg petsc3.9-doc
libpetsc-complex3.9-dev libpetsc-complex3.9 libpetsc-complex3.9-dbg
Architecture: source
Version: 3.9.3+dfsg1-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Science Maintainers
<[email protected]>
Changed-By: Drew Parsons <[email protected]>
Description:
libpetsc-complex3.9 - Shared libraries for version 3.9 of PETSc with Complex
Numbers
libpetsc-complex3.9-dbg - Debugging libraries for PETSc
libpetsc-complex3.9-dev - Static libraries, shared links, header files for
PETSc
libpetsc-real3.9 - Shared libraries for version 3.9 of PETSc
libpetsc-real3.9-dbg - Debugging libraries for PETSc
libpetsc-real3.9-dev - Static libraries, shared links, header files for PETSc
libpetsc3.9-dev-examples - Static libraries, shared links, header files for
PETSc
petsc-dev - Virtual package depending on latest PETSc development package
petsc3.9-doc - Documentation and examples for PETSc
Closes: 904020
Changes:
petsc (3.9.3+dfsg1-3) unstable; urgency=medium
.
* Include the whole upstream mpi version in MPI dependency, including
the subminor (release) version. PETSc is forward compatible with
the same MPI minor version, but must not go backwards in the
subminor. Closes: #904020.
Checksums-Sha1:
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c75d763d0b1085c359b0c25659d587bd575d2c96 38320
petsc_3.9.3+dfsg1-3.debian.tar.xz
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Files:
a39935390592eb3b9910c4d25387125e 3084 devel optional petsc_3.9.3+dfsg1-3.dsc
06a06502ba8c79495dd9e816b6627435 38320 devel optional
petsc_3.9.3+dfsg1-3.debian.tar.xz
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