Package: release.debian.org
Severity: normal
User: release.debian....@packages.debian.org
Usertags: unblock
Please unblock package ants
these two debian revisions (-3 and -4) fixed outstanding serious issues (see
changelog below) marking ants for the autoremoval
unblock ants/2.1.0~rc2+git3-g9103999-4
here is the debdiff:
diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/changelog
ants-2.1.0~rc2+git3-g9103999/debian/changelog
--- ants-2.1.0~rc2+git3-g9103999/debian/changelog 2014-08-18
23:57:59.000000000 -0400
+++ ants-2.1.0~rc2+git3-g9103999/debian/changelog 2014-11-21
15:43:54.000000000 -0500
@@ -1,3 +1,21 @@
+ants (2.1.0~rc2+git3-g9103999-4) unstable; urgency=medium
+
+ * patches/up_lower_cc_3_test_i386_precision
+ - lower precision for the ANTS_CC_3_WARP_METRIC_0 test to mitigate
+ FTBFS on i386 (Closes: #768645)
+
+ -- Yaroslav Halchenko <deb...@onerussian.com> Fri, 21 Nov 2014 15:35:44 -0500
+
+ants (2.1.0~rc2+git3-g9103999-3) unstable; urgency=medium
+
+ * Added Conflicts for gpe-conf also providing bl.1.gz manpage
+ (gpe-conf is for embedded systems, so unlikely to be co-installed with
+ ants in production) (Closes: #768222)
+ * patches/up_Rscript
+ - prepend Rscript call with /usr/bin/env
+
+ -- Yaroslav Halchenko <deb...@onerussian.com> Wed, 05 Nov 2014 21:27:30 -0500
+
ants (2.1.0~rc2+git3-g9103999-2) unstable; urgency=medium
* Robustify bogomips comparison, fix tests execution
diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/control
ants-2.1.0~rc2+git3-g9103999/debian/control
--- ants-2.1.0~rc2+git3-g9103999/debian/control 2014-08-18 23:57:59.000000000
-0400
+++ ants-2.1.0~rc2+git3-g9103999/debian/control 2014-11-21 15:43:54.000000000
-0500
@@ -24,6 +24,7 @@
Package: ants
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
+Conflicts: gpe-conf
Recommends: environment-modules
Suggests: fsl, gridengine-client, r-base-core
Description: advanced normalization tools for brain and image analysis
diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/patches/deb_local-data.patch
ants-2.1.0~rc2+git3-g9103999/debian/patches/deb_local-data.patch
--- ants-2.1.0~rc2+git3-g9103999/debian/patches/deb_local-data.patch
2014-08-18 23:57:59.000000000 -0400
+++ ants-2.1.0~rc2+git3-g9103999/debian/patches/deb_local-data.patch
2014-11-21 15:43:54.000000000 -0500
@@ -5,8 +5,8 @@
Forwarded: no
Last-Update: 2014-08-11
---- ants-2.0.0.orig/CMake/ANTSExternalData.cmake
-+++ ants-2.0.0/CMake/ANTSExternalData.cmake
+--- a/CMake/ANTSExternalData.cmake
++++ b/CMake/ANTSExternalData.cmake
@@ -31,14 +31,7 @@ file:///var/bigharddrive/%(algo)/%(hash)
mark_as_advanced(ExternalData_URL_TEMPLATES)
list(APPEND ExternalData_URL_TEMPLATES
diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/patches/series
ants-2.1.0~rc2+git3-g9103999/debian/patches/series
--- ants-2.1.0~rc2+git3-g9103999/debian/patches/series 2014-08-18
23:57:59.000000000 -0400
+++ ants-2.1.0~rc2+git3-g9103999/debian/patches/series 2014-11-21
15:43:54.000000000 -0500
@@ -1 +1,3 @@
+up_lower_cc_3_test_i386_precision
+up_Rscript
deb_local-data.patch
diff -Nru
ants-2.1.0~rc2+git3-g9103999/debian/patches/up_lower_cc_3_test_i386_precision
ants-2.1.0~rc2+git3-g9103999/debian/patches/up_lower_cc_3_test_i386_precision
---
ants-2.1.0~rc2+git3-g9103999/debian/patches/up_lower_cc_3_test_i386_precision
1969-12-31 19:00:00.000000000 -0500
+++
ants-2.1.0~rc2+git3-g9103999/debian/patches/up_lower_cc_3_test_i386_precision
2014-11-21 15:43:54.000000000 -0500
@@ -0,0 +1,11 @@
+--- a/Examples/TestSuite/ANTS_CC_3_test.cmake
++++ b/Examples/TestSuite/ANTS_CC_3_test.cmake
+@@ -23,7 +23,7 @@ set_property(TEST ${THIS_TEST_NAME}_JPG
+ add_test(NAME ${THIS_TEST_NAME}_WARP_METRIC_0 COMMAND
$<TARGET_FILE:MeasureImageSimilarity> 2 0
+ ${R16_IMAGE} ${WARP_IMAGE}
+ ${OUTPUT_PREFIX}log.txt ${OUTPUT_PREFIX}metric.nii.gz
+- 14.3283 0.05)
++ 14.3283 0.1)
+ set_property(TEST ${THIS_TEST_NAME}_WARP_METRIC_0 APPEND PROPERTY DEPENDS
${THIS_TEST_NAME}_WARP)
+
+ add_test(NAME ${THIS_TEST_NAME}_WARP_METRIC_1 COMMAND
$<TARGET_FILE:MeasureImageSimilarity> 2 1
diff -Nru ants-2.1.0~rc2+git3-g9103999/debian/patches/up_Rscript
ants-2.1.0~rc2+git3-g9103999/debian/patches/up_Rscript
--- ants-2.1.0~rc2+git3-g9103999/debian/patches/up_Rscript 1969-12-31
19:00:00.000000000 -0500
+++ ants-2.1.0~rc2+git3-g9103999/debian/patches/up_Rscript 2014-11-21
15:43:54.000000000 -0500
@@ -0,0 +1,8 @@
+--- a/Scripts/cbf_pasl_robust_batch.R
++++ b/Scripts/cbf_pasl_robust_batch.R
+@@ -1,4 +1,4 @@
+-#!Rscript --vanilla --slave
++#!/usr/bin/env Rscript
+
+ library( "ANTsR" )
+ library("extremevalues" )
-- System Information:
Debian Release: jessie/sid
APT prefers testing
APT policy: (900, 'testing'), (600, 'unstable'), (300, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 3.17-1-amd64 (SMP w/4 CPU cores)
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
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