Package: release.debian.org
Severity: normal
Tags: bookworm
User: release.debian....@packages.debian.org
Usertags: pu
X-Debbugs-Cc: sra-...@packages.debian.org
Control: affects -1 + src:sra-sdk
[ Reason ]
Per #1039621, the new libngs-jni package accidentally wound up with
bad content (unexpanded variables in the key symlink's source *and*
target) that rendered it useless.
[ Impact ]
This package's reverse dependencies, from libngs-java on up, will be
broken unless libncbi-ngs-dev happens to be installed.
[ Tests ]
Various affected packages have autopkgtests, but they evidently missed
the relevant bug, having presumably wound up running with
libncbi-ngs-dev additionally installed. (The tests did catch the
need for architecture restrictions that made it into bookworm, FWIW.)
[ Risks ]
Minimal -- trivial fix, working in testing and unstable with no
further changes from stable.
[ Checklist ]
[*] *all* changes are documented in the d/changelog
[v] I reviewed all changes and I approve them
[v] attach debdiff against the package in (old)stable
[v] the issue is verified as fixed in unstable
[ Changes ]
Tweak debian/rules to make the necessary substitutions in
libngs-java.links.in.
[ Other info ]
In reviewing the debdiff, I see that one of my teammates pushed a
debian/salsa-ci.yml update without a corresponding changelog note that
consequently slipped into -6 undocumented; what should I do about it
at this point?
I've held off on cleaning up a long-dangling symlink in a different
binary package (sra-toolkit, #1040391) but can readily throw that in
if you'd like.
diff -Nru sra-sdk-3.0.3+dfsg/debian/.gitignore
sra-sdk-3.0.3+dfsg/debian/.gitignore
--- sra-sdk-3.0.3+dfsg/debian/.gitignore 2023-02-24 05:52:27.000000000
-0500
+++ sra-sdk-3.0.3+dfsg/debian/.gitignore 1969-12-31 19:00:00.000000000
-0500
@@ -1,16 +0,0 @@
-*.debhelper
-*.substvars
-.debhelper
-.javahelper_clean
-debhelper-build-stamp
-files
-lib*-dev
-lib*[0-9]
-libngs-java
-libngs-java-doc
-libngs-java-doc.doc-base.javadoc
-libngs-jni
-libngs-jni.links
-python3-ngs
-sra-toolkit
-tmp
diff -Nru sra-sdk-3.0.3+dfsg/debian/changelog
sra-sdk-3.0.3+dfsg/debian/changelog
--- sra-sdk-3.0.3+dfsg/debian/changelog 2023-02-24 05:52:27.000000000 -0500
+++ sra-sdk-3.0.3+dfsg/debian/changelog 2023-07-12 22:20:14.000000000 -0400
@@ -1,3 +1,16 @@
+sra-sdk (3.0.3+dfsg-6~deb12u1) bookworm; urgency=medium
+
+ * Reupload to bookworm (stable). (Closes: #10nnnnn).
+
+ -- Aaron M. Ucko <u...@debian.org> Wed, 12 Jul 2023 22:20:14 -0400
+
+sra-sdk (3.0.3+dfsg-6) unstable; urgency=high
+
+ * debian/rules: Expand $(DEB_HOST_MULTIARCH) in libngs-java.links.in.
+ (Closes: #1039621.)
+
+ -- Aaron M. Ucko <u...@debian.org> Tue, 27 Jun 2023 22:14:41 -0400
+
sra-sdk (3.0.3+dfsg-5) unstable; urgency=medium
* Limit libngs-java to those architectures where libs are available
diff -Nru sra-sdk-3.0.3+dfsg/debian/rules sra-sdk-3.0.3+dfsg/debian/rules
--- sra-sdk-3.0.3+dfsg/debian/rules 2023-02-24 05:52:27.000000000 -0500
+++ sra-sdk-3.0.3+dfsg/debian/rules 2023-07-12 22:19:10.000000000 -0400
@@ -152,7 +152,10 @@
execute_before_dh_link:
# Putting the upstream version number (without the dfsg part) at the
end of
# symlink source in the -jni package.
- sed 's/\(#STRIPPED_UPSTREAM_VERSION#\)/\1$(DEB_VERSION_UPSTREAM)/;
s/#STRIPPED_UPSTREAM_VERSION#\(.*\)+dfsg[0-9]*/\1/' debian/libngs-jni.links.in
> debian/libngs-jni.links
+ sed -e 's/\(#STRIPPED_UPSTREAM_VERSION#\)/\1$(DEB_VERSION_UPSTREAM)/' \
+ -e 's/#STRIPPED_UPSTREAM_VERSION#\(.*\)+dfsg[0-9]*/\1/' \
+ -e 's/\$$[({]DEB_HOST_MULTIARCH[)}]/$(DEB_HOST_MULTIARCH)/g' \
+ debian/libngs-jni.links.in > debian/libngs-jni.links
# require network, not automatically run
# use it when the pom file must be re-downloaded from maven repo
diff -Nru sra-sdk-3.0.3+dfsg/debian/salsa-ci.yml
sra-sdk-3.0.3+dfsg/debian/salsa-ci.yml
--- sra-sdk-3.0.3+dfsg/debian/salsa-ci.yml 2023-02-24 05:52:27.000000000
-0500
+++ sra-sdk-3.0.3+dfsg/debian/salsa-ci.yml 2023-07-12 22:19:10.000000000
-0400
@@ -2,3 +2,7 @@
include:
- https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
-
https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
+
+variables:
+# Does not build on i386
+ SALSA_CI_DISABLE_BUILD_PACKAGE_I386: 1
