Your message dated Tue, 19 Mar 2019 11:47:03 +0000
with message-id <[email protected]>
and subject line unblock augustus
has caused the Debian Bug report #924670,
regarding unblock: augustus/3.3.2+dfsg-2
to be marked as done.
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924670: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=924670
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--- Begin Message ---
Package: release.debian.org
Severity: normal
User: [email protected]
Usertags: unblock
Dear release team,
please unblock package augustus.
The only change I have made in the current version in unstable is making
sure that no hardcoded value for Built-Using is used any more,
calculating it from the version used at build time instead. I have also
corrected the name of the respective package referenced by this Built-Using.
Please find attached a debdiff with my changes.
unblock augustus/3.3.2+dfsg-2
Many thanks
Sascha
diff -Nru augustus-3.3.2+dfsg/debian/changelog
augustus-3.3.2+dfsg/debian/changelog
--- augustus-3.3.2+dfsg/debian/changelog 2018-10-06 14:24:12.000000000
+0200
+++ augustus-3.3.2+dfsg/debian/changelog 2019-03-15 17:11:10.000000000
+0100
@@ -1,3 +1,10 @@
+augustus (3.3.2+dfsg-2) unstable; urgency=medium
+
+ * Use dynamic Built-Using in d/control.
+ Closes: #924359
+
+ -- Sascha Steinbiss <[email protected]> Fri, 15 Mar 2019 17:11:10 +0100
+
augustus (3.3.2+dfsg-1) unstable; urgency=medium
* New upstream release.
diff -Nru augustus-3.3.2+dfsg/debian/control augustus-3.3.2+dfsg/debian/control
--- augustus-3.3.2+dfsg/debian/control 2018-10-06 14:24:12.000000000 +0200
+++ augustus-3.3.2+dfsg/debian/control 2019-03-13 16:48:17.000000000 +0100
@@ -28,7 +28,7 @@
Depends: ${shlibs:Depends},
${misc:Depends},
augustus-data
-Built-Using: samtools-legacy (= 0.1.19-2)
+Built-Using: libbam-dev (= ${libbam-dev:Version})
Description: gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
that is based on a generalized hidden Markov model (HMM), a probabilistic
diff -Nru augustus-3.3.2+dfsg/debian/rules augustus-3.3.2+dfsg/debian/rules
--- augustus-3.3.2+dfsg/debian/rules 2018-10-06 14:24:12.000000000 +0200
+++ augustus-3.3.2+dfsg/debian/rules 2019-03-13 17:04:28.000000000 +0100
@@ -3,6 +3,7 @@
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
export TOOLDIR = /usr/include
export AUGUSTUS_CONFIG_PATH=$(CURDIR)/config
+export LIBBAM_PKG_VERSION=$(shell apt-cache policy libbam-dev | grep Installed
| cut -f2 -d: | cut -c2-)
.PHONY: bam2hints homGeneMapping checkTargetSortedness joingenes
%:
@@ -45,6 +46,7 @@
$(MAKE) -C auxprogs/compileSpliceCands clean
$(MAKE) -C auxprogs/filterBam clean
rm -rf bin
+ rm -f debian/*substvars
override_dh_auto_build: aln2wig bam2hints bam2wig checkTargetSortedness
compileSpliceCands filterBam homGeneMapping joingenes
dh_auto_build
@@ -85,3 +87,7 @@
override_dh_compress:
dh_compress -Xtutorial
+
+override_dh_gencontrol:
+ echo "libbam-dev:Version=$(LIBBAM_PKG_VERSION)" >>
debian/augustus.substvars
+ dh_gencontrol
--- End Message ---
--- Begin Message ---
Unblocked.
--- End Message ---
