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and subject line Bug#40904: fixed in clustalw 1.82-1
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Subject: Version 1.8 is out
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Date: Wed, 07 Jul 1999 13:11:13 +0200
From: Stephane Bortzmeyer <[EMAIL PROTECTED]>
Package: clustalw
Version: 1.7
Severity: wishlist
Still non-free :-(
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Subject: Clustal W, Clustal X version 1.8
Date: Tue, 06 Jul 1999 08:26:32 +0200
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Clustal W, Clustal X (Version 1.8) Release
Announcing a release of upgrades to the freely available Clustal W and X
multiple sequence alignment programs. Clustal X provides a windows
interface
(using the NCBI Vibrant toolkit) to Clustal W.
With this release, Clustal X is at last no longer beta test and we can
bring
the version numbers of Clustal X into line with Clustal W. Note the
version 1.8
programs share the same algorithms and parameterisation and produce
exactly the
same alignments.
The main changes to Clustal W are reparameterisation of the alignment
algorithm
and a number of bug fixes (listed in the README). The Gonnet PAM series
is now
the default protein matrix series and gap extension penalty has been
increased.
Clustal X has in addition received a lot of work to the windows
interface.
Users should note that screen refresh is quite slow on all compilations
of
Clustal X. In addition the Mac and PC platforms suffer from a double
refresh
during window resizing. These limitations, though annoying, do not
seriously
affect the utility of the program.
Clustal W and versions of Clustal X for PowerMac, PC (32 bit), and UNIX
(Linux, Alpha, SGI, Sun) can be downloaded from several websites
including:
IGBMC ftp://ftp-igbmc.u-strasbg.fr/pub/
EBI ftp://ftp.ebi.ac.uk/pub/software/
and all sites with mirrors to the EBI
Problems with the 1.8 release may be reported to any of the authors,
including:
Julie Thompson ([EMAIL PROTECTED])
Toby Gibson ([EMAIL PROTECTED])
Des Higgins ([EMAIL PROTECTED])
Francois Jeanmougin ([EMAIL PROTECTED]) especially for
LINUX...
******************************************************************************
POLICY ON COMMERCIAL DISTRIBUTION OF CLUSTAL W/X
Clustal W/X is freely available to the user community. However, Clustal
W/X
is increasingly being distributed as part of commercial sequence
analysis
packages. To help us safeguard future maintenance and development,
commercial
distributors of Clustal W/X must take out a NON-EXCLUSIVE LICENCE.
Anyone
wishing to commercially distribute version 1.8 of Clustal W/X should
contact the
authors unless they have previously taken out a licence.
******************************************************************************
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From: Andreas Tille <[EMAIL PROTECTED]>
To: [EMAIL PROTECTED]
X-Katie: $Revision: 1.59 $
Subject: Bug#40904: fixed in clustalw 1.82-1
Message-Id: <[EMAIL PROTECTED]>
Sender: James Troup <[EMAIL PROTECTED]>
Date: Tue, 30 Oct 2001 14:55:35 -0500
Delivered-To: [EMAIL PROTECTED]
We believe that the bug you reported is fixed in the latest version of
clustalw, which has been installed in the Debian FTP archive:
clustalw_1.82-1_i386.deb
to pool/non-free/c/clustalw/clustalw_1.82-1_i386.deb
clustalw_1.82-1.dsc
to pool/non-free/c/clustalw/clustalw_1.82-1.dsc
clustalw_1.82.orig.tar.gz
to pool/non-free/c/clustalw/clustalw_1.82.orig.tar.gz
clustalw_1.82-1.diff.gz
to pool/non-free/c/clustalw/clustalw_1.82-1.diff.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[EMAIL PROTECTED]> (supplier of updated clustalw package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Mon, 29 Oct 2001 21:40:20 +0100
Source: clustalw
Binary: clustalw
Architecture: source i386
Version: 1.82-1
Distribution: unstable
Urgency: low
Maintainer: Andreas Tille <[EMAIL PROTECTED]>
Changed-By: Andreas Tille <[EMAIL PROTECTED]>
Description:
clustalw - [Biology] A multiple sequence alignment program
Closes: 40904 100213
Changes:
clustalw (1.82-1) unstable; urgency=low
.
* New maintainer
closes: #100213
* New upstream version
closes: #40904
* Standards-Version: 3.5.6
* Moved help file to /usr/share/clustalw/clustalw_help because it
is architecture independend
* Added URL to the package description because I consider this as
"good style" to have an upstream link without installing the package
* Fixed a typo in the examples Makefile which was shiped with the
Debian package:
clustalw -profile -profile1=nuc.aln -profile2=nuc2.aln
-outfile=profile.aln
^ this 2 was missing
Files:
9e8206caf9e2aa225517d7ba98ee1dae 612 non-free/science optional
clustalw_1.82-1.dsc
2991f19fe5646f3c2da5ee629703910a 211722 non-free/science optional
clustalw_1.82.orig.tar.gz
50bda0edc7a9b300a57736a527352f69 6031 non-free/science optional
clustalw_1.82-1.diff.gz
28f51019ef7900b8cde812ccb2d308e1 123444 non-free/science optional
clustalw_1.82-1_i386.deb
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