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and subject line Bug#67657: fixed in phylip 3.573c-5
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From: Patrice Godard <[EMAIL PROTECTED]>
To: Debian Bug Tracking System <[EMAIL PROTECTED]>
Subject: infinite loop in drawtree and drawgram
X-Reportbug-Version: 0.54
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Date: Mon, 24 Jul 2000 14:07:50 +0200
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Sender: Patrice Godard <[EMAIL PROTECTED]>
Delivered-To: [EMAIL PROTECTED]
Package: phylip
Version: 3.573c-1
Severity: normal
experiment:
$ touch treefile
$ phylip drawtree
$ phylip drawgram
patch:
*** drawgram.c.old Thu Jan 28 21:25:57 MET 1999
--- drawgram.c Thu Jan 28 21:26:05 MET 1999
***************
*** 171,176 ****
--- 171,179 ----
getc(treefile);
}
ch = getc(treefile);
+ if (ch == EOF) {
+ fprintf(stderr, "Unexpected EOF, not a valid tree\n");
+ exit(1); }
n++;
} while (ch != ':' && ch != ',' && ch != ')');
if (n > maxnch)
*** drawtree.c~ Mon Jan 25 15:20:03 MET 1999
--- drawtree.c Fri Jan 29 09:47:45 MET 1999
***************
*** 192,197 ****
--- 192,200 ----
(void)getc(treefile);
}
ch = getc(treefile);
+ if (ch == EOF) {
+ fprintf(stderr, "Unexpected EOF, not a valid tree\n");
+ exit(1); }
if (ch == '\n')
ch = ' ';
n++;
-- System Information
Debian Release: 2.2
Architecture: i386
Kernel: Linux ishtar 2.2.17 #1 Sun Jun 25 09:24:41 EST 2000 i586
Versions of packages phylip depends on:
ii libc6 2.1.3-10 GNU C Library: Shared libraries an
---------------------------------------
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From: Andreas Tille <[EMAIL PROTECTED]>
To: [EMAIL PROTECTED]
X-Katie: $Revision: 1.59 $
Subject: Bug#67657: fixed in phylip 3.573c-5
Message-Id: <[EMAIL PROTECTED]>
Sender: James Troup <[EMAIL PROTECTED]>
Date: Tue, 23 Oct 2001 15:07:50 -0400
Delivered-To: [EMAIL PROTECTED]
We believe that the bug you reported is fixed in the latest version of
phylip, which has been installed in the Debian FTP archive:
phylip_3.573c-5.dsc
to pool/non-free/p/phylip/phylip_3.573c-5.dsc
phylip_3.573c-5.diff.gz
to pool/non-free/p/phylip/phylip_3.573c-5.diff.gz
phylip_3.573c-5_i386.deb
to pool/non-free/p/phylip/phylip_3.573c-5_i386.deb
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [EMAIL PROTECTED],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[EMAIL PROTECTED]> (supplier of updated phylip package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [EMAIL PROTECTED])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Tue, 23 Oct 2001 12:35:14 +0200
Source: phylip
Binary: phylip
Architecture: source i386
Version: 3.573c-5
Distribution: unstable
Urgency: low
Maintainer: Andreas Tille <[EMAIL PROTECTED]>
Changed-By: Andreas Tille <[EMAIL PROTECTED]>
Description:
phylip - [Biology] A package of programs for inferring phylogenies.
Closes: 67657
Changes:
phylip (3.573c-5) unstable; urgency=low
.
* New Maintainer
* A patch by Patrice Godard <[EMAIL PROTECTED]> fo fix #67657 is
applied because it compiles well for me in contrast to 3.573c-2
where it was enclosed as patch.diff.
closes: #67657
* Standards-Version: 3.5.6
Files:
d082c7ef42f4a62b3edd0d3b1458123e 611 non-free/misc optional phylip_3.573c-5.dsc
97628e06a6feab046f5ce3d7b5d79f51 10179 non-free/misc optional
phylip_3.573c-5.diff.gz
5854545319fc69a592ee9dd7787a94f9 672766 non-free/misc optional
phylip_3.573c-5_i386.deb
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