Control: tags -1 help
Hi,
I have prepared a fix for this package in Git[1]. Unfortunately I'm
stumbling upon a test suite error which was discussed with upstream
previously. It happens only for Python3 and was ignored before but
this strategy seems to be inappropriate now after droping Python2.
You can simply reproduce the issue even in the unpackaged source:
$ python3 setup.py test
-setup.py: DendroPy version 4.4.0
-setup.py: using setuptools
('/usr/lib/python3/dist-packages/setuptools/__init__.py')
-setup.py: searching for packages
-setup.py: packages identified:
- dendropy
- dendropy.legacy
- dendropy.utility
- dendropy.mathlib
- dendropy.dataio
- dendropy.interop
- dendropy.datamodel
- dendropy.model
- dendropy.calculate
- dendropy.simulate
- dendropy.utility.libexec
-setup.py: scripts identified:
- applications/sumtrees/sumtrees.py
- applications/sumlabels/sumlabels.py
-setup.py: setuptools command extensions are available
running test
running egg_info
writing src/DendroPy.egg-info/PKG-INFO
writing dependency_links to src/DendroPy.egg-info/dependency_links.txt
writing entry points to src/DendroPy.egg-info/entry_points.txt
writing requirements to src/DendroPy.egg-info/requires.txt
writing top-level names to src/DendroPy.egg-info/top_level.txt
reading manifest template 'MANIFEST.in'
warning: no files found matching 'doc/Makefile'
warning: no files found matching '*' under directory 'doc/source'
warning: no previously-included files matching '.DS_Store' found anywhere in
distribution
warning: no previously-included files matching '*.pyc' found anywhere in
distribution
warning: no previously-included files matching '.gitignore' found anywhere in
distribution
warning: no previously-included files matching '.gitattributes' found anywhere
in distribution
warning: no previously-included files matching '.idea' found anywhere in
distribution
warning: no previously-included files matching '__pycache__' found anywhere in
distribution
writing manifest file 'src/DendroPy.egg-info/SOURCES.txt'
running build_ext
Traceback (most recent call last):
File "setup.py", line 192, in <module>
**EXTRA_KWARGS
File "/usr/lib/python3/dist-packages/setuptools/__init__.py", line 145, in
setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.7/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.7/distutils/dist.py", line 966, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.7/distutils/dist.py", line 985, in run_command
cmd_obj.run()
File "/usr/lib/python3/dist-packages/setuptools/command/test.py", line 229,
in run
self.run_tests()
File "/usr/lib/python3/dist-packages/setuptools/command/test.py", line 251,
in run_tests
exit=False,
File "/usr/lib/python3.7/unittest/main.py", line 100, in __init__
self.parseArgs(argv)
File "/usr/lib/python3.7/unittest/main.py", line 147, in parseArgs
self.createTests()
File "/usr/lib/python3.7/unittest/main.py", line 159, in createTests
self.module)
File "/usr/lib/python3.7/unittest/loader.py", line 220, in loadTestsFromNames
suites = [self.loadTestsFromName(name, module) for name in names]
File "/usr/lib/python3.7/unittest/loader.py", line 220, in <listcomp>
suites = [self.loadTestsFromName(name, module) for name in names]
File "/usr/lib/python3.7/unittest/loader.py", line 191, in loadTestsFromName
return self.loadTestsFromModule(obj)
File "/usr/lib/python3/dist-packages/setuptools/command/test.py", line 47, in
loadTestsFromModule
for file in resource_listdir(module.__name__, ''):
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 1162,
in resource_listdir
return get_provider(package_or_requirement).resource_listdir(
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 364, in
get_provider
return _find_adapter(_provider_factories, loader)(module)
File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 1392,
in __init__
self.module_path = os.path.dirname(getattr(module, '__file__', ''))
File "/usr/lib/python3.7/posixpath.py", line 156, in dirname
p = os.fspath(p)
TypeError: expected str, bytes or os.PathLike object, not NoneType
Any hint would be welcome.
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/python-dendropy
--
http://fam-tille.de
