[Piotr Ożarowski, 2018-06-27] > [Stuart Prescott, 2018-06-26] > > > # ls -l /build/snakemake-5.1.5/.pybuild > > > total 8 > > > drwxr-xr-x 3 pbuilder pbuilder 4096 Jun 26 09:20 cpython3_3.6 > > > drwxr-xr-x 3 pbuilder pbuilder 4096 Jun 26 09:20 cpython3_3.6_snakemake > > > > > > and the latter contains all the installed files while the former is > > > empty. How can I prevent this? > > > > Deleting PYBUILD_NAME from your debian/rules is sufficient to fix that. > > When > > set, that sets HOME to the above directory and the build system for some > > reason starts using that. > > > > And no, I can't explain why that is... > > "cpython3_3.6" is used if --name / PYBUILD_NAME is not defined. Name is > added to it to support building multiple modules/extensions at the same > time. If snakemake doesn't invoke pybuild twice (with and without > --name) then existence of cpython3_3.6 (without "_snakemake") is a bug > somewhere in pybuild
FTR: not a bug in pybuild, in line 11 you have: export PATH:=$(shell pybuild --print build_dir --interpreter python3)/bin:$(PATH) and export/pybuild doesn't know about PYBUILD_NAME yet (it's how Makefile works), you need to add "--name $(PYBUILD_NAME)", like this: export PATH:=$(shell pybuild --print build_dir --interpreter python3 --name $(PYBUILD_NAME))/bin:$(PATH) -- GPG: 1D2F A898 58DA AF62 1786 2DF7 AEF6 F1A2 A745 7645
