Hi,
I tried to upgrade the Jessie backport of python-pyvcf from
0.6.7-1~bpo8+1 to 0.6.8-1. Unfortunately when trying to build this
minor update the build runs into lots of errors like:
...
creating build/temp.linux-amd64-2.7
creating build/temp.linux-amd64-2.7/vcf
x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes
-fno-strict-aliasing -g -O2 -fPIE -fstack-protector-strong -Wformat
-Werror=format-security -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c
vcf/cparse.c -o build/temp.linux-amd64-2.7/vcf/cparse.o
x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions
-Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall
-Wstrict-prototypes -D_FORTIFY_SOURCE=2 -g -fstack-protector-strong -Wformat
-Werror=format-security -fPIE -pie -Wl,-z,relro -Wl,-z,now -g -O2 -fPIE
-fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2
build/temp.linux-amd64-2.7/vcf/cparse.o -o
/build/python-pyvcf-0.6.8/.pybuild/pythonX.Y_2.7/build/vcf/cparse.so
/usr/lib/gcc/x86_64-linux-gnu/4.9/../../../x86_64-linux-gnu/Scrt1.o: In
function `_start':
(.text+0x20): undefined reference to `main'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function
`__Pyx_PyFunction_FastCallNoKw':
/build/python-pyvcf-0.6.8/vcf/cparse.c:2681: undefined reference to
`_PyThreadState_Current'
/build/python-pyvcf-0.6.8/vcf/cparse.c:2691: undefined reference to
`PyFrame_New'
/build/python-pyvcf-0.6.8/vcf/cparse.c:2700: undefined reference to
`PyEval_EvalFrameEx'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_AddTraceback':
/build/python-pyvcf-0.6.8/vcf/cparse.c:3732: undefined reference to
`_PyThreadState_Current'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3732: undefined reference to
`PyFrame_New'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3740: undefined reference to
`PyTraceBack_Here'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function
`__Pyx_CreateCodeObjectForTraceback':
/build/python-pyvcf-0.6.8/vcf/cparse.c:3676: undefined reference to
`PyString_FromString'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3683: undefined reference to
`PyString_FromFormat'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3676: undefined reference to
`PyString_FromString'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3690: undefined reference to
`PyString_FromString'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3696: undefined reference to `PyCode_New'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__pyx_insert_code_object':
/build/python-pyvcf-0.6.8/vcf/cparse.c:3648: undefined reference to
`PyMem_Realloc'
/build/python-pyvcf-0.6.8/vcf/cparse.c:3628: undefined reference to
`PyMem_Malloc'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function
`__Pyx_RaiseArgtupleInvalid':
/build/python-pyvcf-0.6.8/vcf/cparse.c:2899: undefined reference to
`PyExc_TypeError'
/build/python-pyvcf-0.6.8/vcf/cparse.c:2899: undefined reference to
`PyErr_Format'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_SetItemInt_Fast':
/build/python-pyvcf-0.6.8/vcf/cparse.c:3296: undefined reference to
`PyInt_FromSsize_t'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function `__Pyx_SetItemInt_Generic':
/build/python-pyvcf-0.6.8/vcf/cparse.c:3255: undefined reference to
`PyObject_SetItem'
build/temp.linux-amd64-2.7/vcf/cparse.o: In function
`__Pyx_PyFunction_FastCallDict':
...
and so on (errors are continuing). Does anybody have an idea what might
went wrong here under Jessie which builds nicely under Stretch or should
I post a full build log?
Kind regards
Andreas.
--
http://fam-tille.de
