On 31.03.2014 17:08, Diane Trout wrote: > Hi, > > I have a small package the depends on numpy and it recently stopped working. > >> Traceback (most recent call last): >> File "/usr/local/lib/R/site- > library/DEXSeq/python_scripts/dexseq_prepare_annotation.py", >> line 33, in <module> >> import HTSeq >> File "/usr/lib/python2.7/dist-packages/HTSeq/__init__.py", line 9, >> in <module> >> from _HTSeq import * >> File "numpy.pxd", line 155, in init HTSeq._HTSeq (src/_HTSeq.c:33074) >> ValueError: numpy.dtype has the wrong size, try recompiling > > > I'm pretty sure a recompile will fix it, the question I have is how often > does > numpy break binary compatibility? > > Should set your numpy dependencies to something like: > > python-numpy (>= 1.8, < 1.9) >
numpy doesn't break compatibility often on purpose, the goal is never as its a major pain for windows users. The last accidental break was in 1.6 which we solved by just recompiling the rdepends. Are you sure you are not picking up something from /usr/local? import HTSeq works for me in unstable. -- To UNSUBSCRIBE, email to debian-python-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: https://lists.debian.org/5339af51.9070...@googlemail.com
