Hi,
after Debian Med sprint we had this week-end in Schönberg (22/02 ->
25/02), here is a report about the work I've done during this sprint.
Tasks done were also added to the Sprint wiki page [0]
1. I had committed to work with Andreas on Goby packaging. After a look
to the library, it appeared that the source relies on a large number of
libraries not available in Debian. Furthermore, at least one of its
dependencies is in non-free section. This meant we could not go to the
free section as expected (contrib at best).
To get a clear view on what is missing, I made a list of all used
libraries not available in Debian with their upstream location when
available [1] (and dependencies of dependencies,...).
Some deps source could not be (yet) found, and I am afraid that other
libraries may cause issues because Goby relies on very old versions.
We have decided for, at least for moment, that we would include part
of those libraries in the package and push it to non-free section.
2. After point 1 analysis, I decided to work on igv (which makes use of
goby). A first draft of the package is available. Additional updates and
tests need yet to be done to use some Debian available libs originally
included in upstream code. Some copyright updates need also to be fixed
before upload to non-free.
A request to Debian-Java has been done to upgrade libbcprov-java (new
release is required, #701698).
3. My initial commitments were to work on
libgenome-model-tools-music-perl . During the week-end I packaged them
in Debian Perl as well as all its dependencies. We decided to keep
libgenome-model-tools-music-perl and libgenome-perl in Debian Perl and
to simply add Debian Med as additional maintainers.
- Base dependencies libclass-autoloadcan-perl,
libgetopt-complete-perl, libtest-fork-perl have been packaged and are
waiting for upload by Debian Perl team.
- libur-perl, libgenome-perl and libgenome-model-tools-music-perl
are ready for upload but waiting for previous dependencies availability
for complete testing.
4. Bug squashing
Fix a bug in beast-mcmc (#698497).
5. Discuss with Christoph Gille about STRAP and proposed my help for
Java packaging stuff.
6. A few key signing....
[0] http://wiki.debian.org/DebianMed/Meeting/Kiel2013
[1] https://lists.debian.org/debian-med/2013/02/msg00152.html
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gpg key id: 4096R/326D8438 (keyring.debian.org)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
