Dear all, I am trying to build a program, `Maq', in order to make a Debian package of it. Unfortunately, gcc crashes when compiling it on powerpc:
checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h /usr/bin/make -C . make[1]: Entering directory `/home/charles/debian/debian-med/trunk/packages/maq/build-area/maq-0.6.7' cd . && /bin/sh /home/charles/debian/debian-med/trunk/packages/maq/build-area/maq-0.6.7/missing --run autoheader rm -f stamp-h1 touch config.h.in cd . && /bin/sh ./config.status config.h config.status: creating config.h config.status: config.h is unchanged /usr/bin/make all-am make[2]: Entering directory `/home/charles/debian/debian-med/trunk/packages/maq/build-area/maq-0.6.7' cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c main.c cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c const.c cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c seq.c cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c bfa.c g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o read.o read.cc cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c fasta2bfa.c cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c fastq2bfq.c g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o merge.o merge.cc g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o match_aux.o match_aux.cc g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o match.o match.cc g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o sort_mapping.o sort_mapping.cc sort_mapping.cc: In function ‘int ma_make_pair(const match_aux_t*, const match_info_t*, const match_info_t*, pair_info_t*)’: sort_mapping.cc:59: warning: suggest parentheses around arithmetic in operand of ^ g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o assemble.o assemble.cc assemble.cc: In function ‘base_call_aux_t* assemble_cns_collect(assemble_pos_t*, const assemble_aux_t*)’: assemble.cc:106: warning: suggest parentheses around arithmetic in operand of | g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o pileup.o pileup.cc g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o mapcheck.o mapcheck.cc cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c get_pos.c cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c assopt.c cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c aux_utils.c g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o rbcc.o rbcc.cc g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o subsnp.o subsnp.cc g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o pair_stat.o pair_stat.cc g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o indel_soa.o indel_soa.cc indel_soa.cc: In function ‘void fill_counter(bit32_t*, int, nst_bfa1_t*, void*)’: indel_soa.cc:42: warning: suggest parentheses around + or - inside shift indel_soa.cc:56: warning: suggest parentheses around + or - inside shift cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c maqmap.c cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c maqmap_conv.c g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o altchr.o altchr.cc cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c submap.c g++ -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c -o rmdup.o rmdup.cc cc -DHAVE_CONFIG_H -I. -Wall -m64 -D_FASTMAP -g -O2 -g -Wall -O2 -c simulate.c simulate.c: In function ‘simustat_core’: simulate.c:374: internal compiler error: in expand_expr_real_1, at expr.c:9199 Please submit a full bug report, with preprocessed source if appropriate. See <file:///usr/share/doc/gcc-4.3/README.Bugs> for instructions. make[2]: *** [simulate.o] Error 1 make[2]: Leaving directory `/home/charles/debian/debian-med/trunk/packages/maq/build-area/maq-0.6.7' make[1]: *** [all] Error 2 make[1]: Leaving directory `/home/charles/debian/debian-med/trunk/packages/maq/build-area/maq-0.6.7' make: *** [debian/stamp-makefile-build] Error 2 dpkg-buildpackage: failure: debian/rules build gave error exit status 2 Command dpkg-buildpackage -us -uc failed in <unknown>, how to continue now? [Qri?]: Q Aborting. The crash does not happen with DEB_BUILD_OPTIONS=noopt set… The preliminary debian package is in Debian-Med's Subversion repository: svn://svn.debian.org/svn/debian-med/trunk/packages/maq/trunk/ Maq is on Sourceforge: http://downloads.sourceforge.net/maq/maq-0.6.7.tar.bz2 Do you think that it is a bug in Maq or in gcc ? Have a nice day, -- Charles Plessy Debian-Med packaging team Tsurumi, Kanagawa, Japan -- To UNSUBSCRIBE, email to [EMAIL PROTECTED] with a subject of "unsubscribe". Trouble? Contact [EMAIL PROTECTED]
