On Sun, 22 Apr 2012 22:15:04 +0200, Andreas Tille wrote:

> similarly to the plink case I can not found an easy solution for this
> problem.

> alphabet.h:48:3: error: 'reverseInPlace' was not declared in this scope, and 
> no declarations were found by argument-dependent lookup at the point of 
> instantiation [-fpermissive]

Moving reverseInPlace before reverseComplementInPlace (which uses the
former) in alphabet.h seems to be enough.

Cheers,
gregor 
 
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