On Tue, Jan 17, 2012 at 2:07 PM, Jakub Wilk <jw...@debian.org> wrote: > * Carlos Borroto <carlos.borr...@gmail.com>, 2012-01-17, 13:45: > >> I'm working in a tool named TopHat[1]. It builds correctly on amd64: >> >> https://launchpadlibrarian.net/89809979/buildlog_ubuntu-oneiric-amd64.tophat_1.4.0-1~oneiric2_BUILDING.txt.gz >> >> But fails on i386: >> >> https://launchpadlibrarian.net/89813979/buildlog_ubuntu-oneiric-i386.tophat_1.4.0-1~oneiric2_FAILEDTOBUILD.txt.gz >> >> The same happens in a local cowbuilder environment for Debian Sid. The >> relevant part seems to be: >> g++ -Wall -Wno-strict-aliasing -march=i686 -O3 -g -O2 -DNDEBUG >> -I/usr/include/seqan -Wall -Wno-strict-aliasing -march=i686 -O3 -g -O2 >> -DNDEBUG -Wl,-Bsymbolic-functions -L/usr/lib -o gtf_to_fasta >> GTFToFasta.o FastaTools.o ../src/libtophat.a libgc.a -lbam -lz -lz >> GTFToFasta.o: In function `GFaSeqGet': >> /build/buildd/tophat-1.4.0/src/GFaSeqGet.h:66: undefined reference to >> `GFaSeqGet::finit(char const*, long, bool)' >> collect2: ld returned 1 exit status >> make[3]: *** [gtf_to_fasta] Error 1 > > > Providing a link to the source package would be helpful. >
This is a new package not submitted yet, I guess the best I can point you to is: http://anonscm.debian.org/gitweb/?p=debian-med/tophat.git;a=summary Thanks for looking into this issue. Please let me know if there is anything else I could do to make it easier. Carlos -- To UNSUBSCRIBE, email to debian-mentors-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org Archive: http://lists.debian.org/CABgGhB+oWcJnWqAFx36j-rAAR6edz96Vx-6t7RuAH9BWT3uc=g...@mail.gmail.com
