Hi,
I had a look into the file in question which has something like:
$ grep para_read dialign.c
extern void para_read( int num , char **arg );
para_read( argnum , arguments );
Any idea why this leads to
undefined reference to `para_read'
Kind regards
Andreas.
----- Forwarded message from Lucas Nussbaum <lu...@lucas-nussbaum.net> -----
X-Debian-PR-Message: report 618057
X-Debian-PR-Package: src:dialign
X-Debian-PR-Keywords: sid wheezy
X-Debian-PR-Source: dialign
Date: Sun, 13 Mar 2011 18:01:03 +0100
From: Lucas Nussbaum <lu...@lucas-nussbaum.net>
To: sub...@bugs.debian.org
X-Spam_score: -4.1
Subject: Bug#618057: dialign: FTBFS: dialign.c:345:
undefined reference to `para_read'
Source: dialign
Version: 2.2.1-4
Severity: serious
Tags: wheezy sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20110313 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> gcc -g -O2 -g -O2 dialign.c
> /tmp/cc7u3cW4.o: In function `main':
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:345:
> undefined reference to `para_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:389:
> undefined reference to `seq_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:489:
> undefined reference to `seq_shift'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:545:
> undefined reference to `matrix_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:547:
> undefined reference to `mem_alloc'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:629:
> undefined reference to `tp400_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:736:
> undefined reference to `newAligGraphClosure'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:787:
> undefined reference to `translate'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:791:
> undefined reference to `translate'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:794:
> undefined reference to `invert'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:795:
> undefined reference to `invert'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:796:
> undefined reference to `invert'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:798:
> undefined reference to `translate'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1150:
> undefined reference to `ow_bubble_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1176:
> undefined reference to `filter'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1190:
> undefined reference to `print_log'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1193:
> undefined reference to `print_fragments'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1195:
> undefined reference to `throw_out'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1197:
> undefined reference to `sel_test'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:867:
> undefined reference to `bubble_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:880:
> undefined reference to `filter'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:968:
> undefined reference to `para_print'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1144:
> undefined reference to `ow_add'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1047:
> undefined reference to `frag_chain'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1152:
> undefined reference to `frag_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1158:
> undefined reference to `bubble_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1160:
> undefined reference to `frag_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1226:
> undefined reference to `av_tree_print'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1234:
> undefined reference to `subst_mat'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:1239:
> undefined reference to `ali_arrange'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:869:
> undefined reference to `frag_sort'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:392:
> undefined reference to `regex_parse'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:487:
> undefined reference to `seq_parse'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:627:
> undefined reference to `tp400_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:625:
> undefined reference to `tp400_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:596:
> undefined reference to `multi_anc_read'
> /build/user-dialign_2.2.1-4-amd64-rVHY9k/dialign-2.2.1/src/dialign.c:619:
> undefined reference to `exclude_frg_read'
> collect2: ld returned 1 exit status
The full build log is available from:
http://people.debian.org/~lucas/logs/2011/03/13/dialign_2.2.1-4_lsid64.buildlog
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on about 50 AMD64 nodes
of the Grid'5000 platform, using a clean chroot. Internet was not
accessible from the build systems.
--
| Lucas Nussbaum
| lu...@lucas-nussbaum.net http://www.lucas-nussbaum.net/ |
| jabber: lu...@nussbaum.fr GPG: 1024D/023B3F4F |
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