If we are removing the "khmer" bioinformatics tool for being abandoned upstream, then we need to finish packaging sourmash.
Sourmash is a Python package with a rust core, and there are some rust crates that need brand NEW Debian packages according to "cargo-debstatus": - az v1.2.1 - counter v0.6.0 - murmurhash3 v0.0.5 - needletail v0.5.1 - histogram v0.11.0 - niffler v2.6.0 - proc-macro2-diagnostics v0.10.1 - piz v0.5.1 - codepage-437 v0.1.0 - rocksdb v0.21.0 - librocksdb-sys v0.11.0+8.1.1 - roots v0.0.8 - vec-collections v0.4.3 - sorted-iter v0.1.8 Any volunteers to crank out some new Debian packages for these rust crates? I only have a small amount of rust for Debian experience myself. Bonus crate that is optional: - finch v0.6.0 On 18/01/2019 16.08, Michael R. Crusoe wrote:
Package: wnpp Severity: wishlist Owner: Debian Med team <debian-med@lists.debian.org> * Package name : sourmash Version : 2.0.0~a11 Upstream Author : C. Titus Brown <ti...@idyll.org>, Luiz C. Irber, Jr <sourm...@luizirber.org> * URL : http://sourmash.readthedocs.io/en/latest/ * License : BSD-3-Clause Programming Lang: Python, C++ Description : tools for comparing DNA sequences with MinHash sketches Compute MinHash signatures for nucleotide (DNA/RNA) and protein sequences. . MinHash sketches provide a lightweight way to store “signatures” of large DNA or RNA sequence collections, and then compare or search them using a Jaccard index. MinHash sketches can be used to identify samples, find similar samples, identify data sets with shared sequences, and build phylogenetic trees (Ondov et al. 2015). . sourmash provides a command line script, a Python library, and a CPython module for MinHash sketches Sourmash is team maintained by Debian-Med at https://salsa.debian.org/med-team/sourmash
OpenPGP_signature.asc
Description: OpenPGP digital signature
