On Tue, Dec 20, 2022 at 09:29:38PM +0100, Andreas Tille wrote: > I've upgraded augur after python3-pyfastx is available. Unfortunately there > are three remaining errors - two of them definitely related to UTF-8 issues > the third one possibly[1]
Not exactly UTF-8 I guess, the error also spews out "zstd.ZstdError: zstd decompress error: Unknown frame descriptor" when I checked the code for augur.io.file.open_file, I realised this uses directly uses xopen. The version of xopen needed by augur is 1.7.0, as you could also check in setup.py as well[2] Simply updating xopen to 1.7.0 and building augur against it does the job. I have just uploaded xopen and augur both. > [1] https://salsa.debian.org/med-team/augur/-/jobs/3684088 [2] https://salsa.debian.org/med-team/augur/-/blob/master/setup.py#L64 -- Best, Nilesh
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