Hi Aaron,
On Fri, Apr 09, 2021 at 12:01:21AM -0400, Aaron M. Ucko wrote:
> Never mind, this appears to be a different issue, per a backtrace
> obtained with EXCEPTION_STACK_TRACE_LEVEL=Error and a great deal of
> patience:
>
> Error: tblastn encountered an error:
> terminate called after throwing an instance of 'ncbi::CMutexException'
> what(): NCBI C++ Exception:
> T29 "c++/include/corelib/ncbidiag.hpp", line 417: Error:
> (CMutexException::eOwner)
> ncbi::ncbi_namespace_mutex_mt::SSystemMutex::ThrowNotOwned() - Mutex is not
> owned by current thread
> Stack trace:
> /usr/lib/ncbi-blast+/libxncbi.so ???:0
> ncbi::CMutexException::CMutexException(ncbi::CDiagCompileInfo const&,
> ncbi::CException const*, ncbi::CMutexException::EErrCode,
> std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char>
> > const&, ncbi::EDiagSev) offset=0x3C addr=0xffff83061d9c
> /usr/lib/ncbi-blast+/libxncbi.so ???:0
> ncbi::ncbi_namespace_mutex_mt::SSystemMutex::ThrowNotOwned() offset=0x88
> addr=0xffff82f76534
> /usr/lib/ncbi-blast+/libxncbi.so ???:0
> ncbi::ncbi_namespace_mutex_mt::SSystemMutex::Unlock(ncbi::ncbi_namespace_mutex_mt::SSystemFastMutex::ELockSemantics)
> offset=0x78 addr=0xffff83057938
> /usr/lib/ncbi-blast+/libseqdb.so ???:0
> ncbi::CSeqDBLockHold::~CSeqDBLockHold() offset=0x30 addr=0xffff84305fa0
> /usr/lib/ncbi-blast+/libseqdb.so ???:0
> ncbi::CSeqDBImpl::GetSeqLength(int) const offset=0x48 addr=0xffff8432ca1c
> /usr/lib/ncbi-blast+/libblast.so ???:0 BLAST_SetupPartialFetching
> offset=0x134 addr=0xffff84442904
> /usr/lib/ncbi-blast+/libblast.so ???:0 offset=0x27938
> addr=0xffff8441f938
> /usr/lib/aarch64-linux-gnu/libgomp.so.1 ???:0 offset=0x18CB0
> addr=0xffff81f19cb0
> /lib/aarch64-linux-gnu/libpthread.so.0 ???:0 offset=0x8628
> addr=0xffff82027628
> /lib/aarch64-linux-gnu/libc.so.6 ???:0 offset=0xD601C
> addr=0xffff82c2001c
Thanks a lot for your investigation. Unfortunately I have no idea how
to proceed from here. Does anybody have an idea? I mean a better idea
than just stating this package does not work on arm64 which would
probably some last resort.
Kind regards
Andreas.
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