On 07/03/2021 23:47, Tassia Camoes Araujo wrote:
Hi all,
On 2021-03-05 11:09, Tassia Camoes Araujo wrote:
[...]
Since deadline is approaching quickly, I suggest we move this off-list
and start writing in a wiki or pad.
Here is my first draft, pasted below for your reference, but you can
edit the text directly in this pad:
https://storm.debian.net/shared/OCYsOOEqJ5-CcfjVxIiye-ex-4LheegyP1pkIFghMKa
Help needed to write the Intern tasks section. Also, please check if you
have better scientific articles to recommend and list a few tools to be
used in the starter tasks.
Please help shaping this proposal so it ***really*** makes sense and
attract interns ;-)
Hi, Tassia.
I recommend using "flexbar", which I use, instead of "Trimmomatic":
https://github.com/seqan/flexbar
Also, depending on the sequencing technology used, consider assembling
short-paired-end reads with e.g. Pear:
https://github.com/tseemann/PEAR
HTH,
Tony.
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