https://salsa.debian.org/med-team/hts-nim-tools
Hello, It is one fat binary that acts as both a container and a wrapper of all the other executables. This should help avoid name conflicts and we can still patch bcbio should this turn out to be required. It is also how upstream wants it to be compiled, so we should be fine. This is a top-level package from bcbio's point of view, i.e. please take your time. I'll address nim-d3 next and the reupload of seqcluster. There there is pyomo and then ... donno, I expect we get fairly far at least with a subset of the bcbio workflows that do not use snpeff such that bcbio can transition to testing. Many thanks and regards, Steffen
