Hi Andrius, Med Team Step 1 First I maked git clone
git clone https://github.com/zsolt-balazs/LoRTIA Step 2 than I install dependencies Bedtools shruti@debian:~$ sudo apt-get install bedtools Reading package lists... Done Building dependency tree Reading state information... Done bedtools is already the newest version (2.29.2+dfsg-3). Step 3 Install Anacondas for pandas Requirement already satisfied: pandas in ./.local/lib/python3.8/site-packages (1.1.3) Requirement already satisfied: pytz>=2017.2 in /usr/lib/python3/dist-packages (from pandas) (2020.1) Requirement already satisfied: python-dateutil>=2.7.3 in /usr/lib/python3/dist-packages (from pandas) (2.8.1) Requirement already satisfied: numpy>=1.15.4 in /usr/lib/python3/dist-packages (from pandas) (1.19.2) and pysam Step 4 Install Biopythonshruti@debian:~$ pip3 install Biopython Requirement already satisfied: Biopython in ./.local/lib/python3.8/site-packages (1.78) Requirement already satisfied: numpy in /usr/lib/python3/dist-packages (from Biopython) (1.19.2) Step 5 Install Pysam Requirement already satisfied: pysam in ./.local/lib/python3.8/site-packages (0.16.0.1) Step 6 shruti@debian:~$ pip3 install scipy Requirement already satisfied: scipy in ./.local/lib/python3.8/site-packages (1.5.3) Requirement already satisfied: numpy>=1.14.5 in /usr/lib/python3/dist-packages (from scipy) (1.19.2) Step 7 pip3 install LoRTIA (I used this command than I got this error) Not able to install LoRTIA package its showing following error ERROR: Could not find a version that satisfies the requirement LoRTIA (from versions: none) ERROR: No matching distribution found for LoRTIA Now I start reading the Mentoring of the Month (MoM) and start working again on LoRTIA. Thanks for your consideration and support. Regards Shruti Gupta On Mon, Oct 26, 2020 at 1:29 PM shruti gupta <[email protected]> wrote: > Hello Everyone > > Since I was interesting to working on the LoRTIA package, but I am not > able to figure out right now what I have to do in this exactly. > Can you please suggest the next steps. > > > Regards > Shruti Gupta > > On Fri, Oct 23, 2020 at 10:38 PM shruti gupta <[email protected]> > wrote: > >> Hi Med Team >> I am working on LoRTIA >> >> I have installed all the dependencies as given in READ.md >> - [bedtools] (tested v. 2.28) Make sure that `bedtools> >> - [pandas] (tested v. 0.24.0 and up) >> - [Biopython] (tested Release 1.73) >> - [pysam] (tested v. 0.15.0) >> - [scipy] (tested v. 1.2.2) >> >> Not able to install LoRTIA package its showing following error >> ERROR: Could not find a version that satisfies the requirement LoRTIA >> (from versions: none) >> ERROR: No matching distribution found for LoRTIA >> >> Please suggest to me next steps what exactly I have to do in this package. >> >> Regards >> Shruti Gupta >> >> >> >> >> On Thu, Oct 22, 2020 at 10:41 PM shruti gupta <[email protected]> >> wrote: >> >>> Hello Everyone >>> >>> I am working on LoRTIA >>> >>> I have installed all the dependencies as given in READ.md >>> - [bedtools] (tested v. 2.28) Make sure that `bedtools> >>> - [pandas] (tested v. 0.24.0 and up) >>> - [Biopython] (tested Release 1.73) >>> - [pysam] (tested v. 0.15.0) >>> - [scipy] (tested v. 1.2.2) >>> >>> Kindly suggest to me what I have to do in this package. >>> >>> Thanks to you all for your support. >>> >>> Regards >>> Shruti Gupta >>> >>> >>>
