Hello, I was after an idea about how the workflow packages for nextflow could possibly look like. There is no setup script, more like .install everything to the right location. The scripts with the .nf suffix indeed have a #!nextflow shebang line - let alone for help2man we need some preliminary nextflow package, I think. I admit to have somewhat given up on the capsule package. Maybe we can patch this out from the test routines somehow?!? I'll have a look.
The original artic implementation is not by the nf-core folks but hidden in the "fieldbioinformatics" package of the artic-network. I added that package - maybe that is easier than finishing the artic nextflow package. And if we mean testing seriously, then should eventually compare the two implementations, right? I'll give that a shot, I think. Best, Steffen
