> > https://github.com/nf-core/nanoseq/blob/master/bin/scrape_software_versions.py > > guppy > Missing in Debian. Is it this project > https://staff.aist.go.jp/yutaka.ueno/guppy/ ?
Hi, Andreas, No, it seems that guppy is a base caller provided by Oxford Nanopore technologies. ``` $ pwd /home/jaruga/git/nf-core/nanoseq $ grep -r guppy * ... conf/base.config: container = 'genomicpariscentre/guppy-gpu:3.4.4' conf/base.config: container = 'genomicpariscentre/guppy:3.4.4' ... Then check the containers Dockerfile. https://hub.docker.com/r/genomicpariscentre/guppy/dockerfile > wget -q > https://mirror.oxfordnanoportal.com/software/analysis/ont_guppy_cpu_${PACKAGE_VERSION}-1~xenial_amd64.deb https://hub.docker.com/r/genomicpariscentre/guppy-gpu/dockerfile > wget -q > https://mirror.oxfordnanoportal.com/software/analysis/ont_guppy_${PACKAGE_VERSION}-1~xenial_amd64.deb ``` It might not be open source software, seeing the following page. Here is a user's page about guppy in Japanese. I could not find the English page. You can see the guppy's screen shot on https://community.nanoporetech.com/downloads page. http://kazumaxneo.hatenablog.com/entry/2020/01/19/145940 > Thanks again Jun for your very helpful contribution You are welcome. Let me comment on your comments later. Cheers, Jun -- Jun | He - His - Him
