I am bussy making a list, but I want to let know this. Fastqc is on the debian med package list (https://tracker.debian.org/pkg/fastqc)
There are more, all seem gpl3 and later: https://www.bioinformatics.babraham.ac.uk/projects/index.html On 23-03-20 15:37, Andreas Tille wrote: > [Please do not communicate in private - I've CCed Debian Med list] > > Hi Ben, > > On Mon, Mar 23, 2020 at 02:20:39PM +0100, Ben Tris wrote: >>> We URGENTLY NEED more input about what packages are really relevant for >>> COVID-19 and what not! >> Do you mean input from the teams packages or other? > Both. > >> I can make a list with your teams packages that have recent uploaded >> updates not yet applied. >> >> I can also find out which packages are recently updated from the >> packages tracker info. >> >> That might give some clue. > Someone should browse the list of packages > > https://blends.debian.org/med/tasks/bio > https://blends.debian.org/med/tasks/bio-dev > https://blends.debian.org/med/tasks/epi > ??? > > which one are helpful for COVID-19 and we should add these to > > https://salsa.debian.org/blends-team/med/-/blob/master/tasks/covid-19 > > My first shot was just > > cwltool, snakemake > > but we have more. That's the time for experts in virology and > epidemiology to do a sensible categorisation. You can also browse the > internet and add comments there as I did today. Than we take over and > start packaging. At the time of writing I've uploaded augur and pinged > ftpmaster on IRC for chances of fast processing. > >> If you want me to contact the sources, or other, let me know. >> >> Packages links do not directly go to the new tracker on this link: >> https://blends.debian.org/med/bugs/covid-19.html > Unfortunately I have a day job which is currently also very demanding > and I can not work with full effort on Debian Med. If you think > something is missing on > > https://blends.debian.org/med/ > > Here is the source code: > > > https://salsa.debian.org/blends-team/website/-/blob/master/www/med/index.html > > Pushing this will update the page. Adding links to relevant pages would > be really helpful. > > Kind regards > > Andreas. > >> On 23-03-20 13:28, Andreas Tille wrote: >>> Hi Ben, >>> >>> On Mon, Mar 23, 2020 at 10:24:15AM +0100, Ben Tris wrote: >>>> Is it possible for you to make a covid special on your main site with >>>> covid related packages? >>> We are working on this: >>> >>> https://blends.debian.org/med/tasks/covid-19 >>> >>> Bugs in these packages are assembled here: >>> >>> https://blends.debian.org/med/bugs/covid-19.html >>> >>> We URGENTLY NEED more input about what packages are really relevant for >>> COVID-19 and what not! >>> >>>> Maybe even on the Debian main site. >>>> >>>> Something like: >>>> >>>> How is Debian helping: Covid disease. >>>> >>>> How all of us benefit. >>>> >>>> How you can help. >>> We are working on this. >>> >>> Thanks a lot for your hint in any case >>> >>> Andreas. >>> >>
