On Wed, Mar 18, 2020 at 03:01:56PM -0700, Benjamin Buchfink wrote: > > > > > > The package builds now. I admit I'd be happy if there would be any at least > > basic test suite to test the functionality. May be you could provide some > > simple data set and run the commands from README.md > > > > ``` > > diamond makedb --in nr.faa -d nr > > diamond blastx -d nr -q reads.fna -o matches.m8 > > ``` > > > > In Debian we are doing an effort to test all packages in the field of > > bioinformatics in a Continuous Integration environment. It would be helpful > > if this could be provided with some test you crafted and used yourself as > > author of the software. > > Thanks a lot for your quick response, Andreas. > > Sorry it took this long. A test suite is finally available in the latest > release. Run `diamond test`.
We should definitly try this. Unfortunately I get in cmake step: undefined reference to 'pthread_create' Any takers in Debian Med team are welcome. Salsa repository is updated. Kind regards, Andreas.
