Hello, (edited into a different thread since it's about a different package)
> > Which is a dependency for scanpy > > https://pypi.org/project/scanpy/ > > > > Which is a single-cell RNA seq analysis package. > > We probably want this! :) It looked pretty useful and I noticed some of our collaborators were also using it. Scanpy takes advantage of a bunch of tools of various difficulties to package. anndata https://github.com/theislab/anndata (packaged, need to create salsa project and file ITP) umap-learn https://github.com/lmcinnes/umap (packaged, need to create salsa project and file ITP) MulticoreTSNE https://github.com/DmitryUlyanov/Multicore-TSNE (Lacks release tags, haven't tried to package yet) leidenalg https://github.com/vtraag/leidenalg (partially packaged, need to fix boilerplate and add copyright) louvain https://github.com/vtraag/louvain-igraph (partially packaged, need to fix boilerplate and add copyright also upstream deprecated in favor of leidenalg, though scanpy & monocle3 still use) Cellbrowser https://github.com/maximilianh/cellBrowser/blob/master/LICENSE (Partially packaged, but so much embedded javascript :( ) Diane
