Hi Andreas, Thanks for your help with adding the missing licenses! After the new pandas release, q2-metadata builds without errors. So, it's ready for the upload to the NEW again!
With regards, Liubov On Tue, 12 Nov 2019 at 11:31, Andreas Tille <[email protected]> wrote: > Hi Thorsten, > > the license issue is fixed but I did not uploaded yet since there are > a build time test errors. Liubov, could you investigate this: > > > dh_auto_test -- -s custom --test-args="cd {build_dir}; py.test-3 > --cov=q2_metadata" > I: pybuild pybuild:272: ln -s > /usr/share/javascript/jquery-datatables/jquery.dataTables.min.js > /build/q2-metadata-2019.10.0+dfsg/.pybuild/cpython3_3.7/build/q2_metadata/templates/tabulate/datatables.min.js > I: pybuild base:217: cd > /build/q2-metadata-2019.10.0+dfsg/.pybuild/cpython3_3.7/build; py.test-3 > --cov=q2_metadata > ============================= test session starts > ============================== > platform linux -- Python 3.7.5, pytest-4.6.6, py-1.8.0, pluggy-0.13.0 > rootdir: /build/q2-metadata-2019.10.0+dfsg > plugins: cov-2.8.1 > collected 0 items / 3 errors > > ==================================== ERRORS > ==================================== > _ ERROR collecting > .pybuild/cpython3_3.7/build/q2_metadata/tests/test_distance.py _ > ImportError while importing test module > '/build/q2-metadata-2019.10.0+dfsg/.pybuild/cpython3_3.7/build/q2_metadata/tests/test_distance.py'. > Hint: make sure your test modules/packages have valid Python names. > Traceback: > /usr/lib/python3/dist-packages/pandas/__init__.py:26: in <module> > from pandas._libs import (hashtable as _hashtable, > /usr/lib/python3/dist-packages/pandas/_libs/__init__.py:4: in <module> > from .tslib import iNaT, NaT, Timestamp, Timedelta, OutOfBoundsDatetime > pandas/_libs/tslibs/c_timestamp.pxd:7: in init pandas._libs.tslib > ??? > pandas/_libs/tslibs/c_timestamp.pyx:1: in init > pandas._libs.tslibs.c_timestamp > ??? > pandas/_libs/tslibs/tzconversion.pyx:1: in init > pandas._libs.tslibs.tzconversion > ??? > pandas/_libs/tslibs/timedeltas.pyx:1: in init > pandas._libs.tslibs.timedeltas > ??? > pandas/_libs/tslibs/conversion.pxd:10: in init pandas._libs.tslibs.offsets > ??? > pandas/_libs/tslibs/conversion.pyx:34: in init > pandas._libs.tslibs.conversion > ??? > pandas/_libs/tslibs/parsing.pyx:34: in init pandas._libs.tslibs.parsing > ??? > E ModuleNotFoundError: No module named 'pandas._config' > > During handling of the above exception, another exception occurred: > q2_metadata/__init__.py:9: in <module> > from ._tabulate import tabulate > q2_metadata/_tabulate.py:13: in <module> > import pandas as pd > /usr/lib/python3/dist-packages/pandas/__init__.py:35: in <module> > "the C extensions first.".format(module)) > E ImportError: C extension: No module named 'pandas._config' not built. > If you want to import pandas from the source directory, you may need to run > 'python setup.py build_ext --inplace --force' to build the C extensions > first. > _ ERROR collecting > .pybuild/cpython3_3.7/build/q2_metadata/tests/test_plugin_setup.py _ > /usr/lib/python3/dist-packages/py/_path/local.py:701: in pyimport > __import__(modname) > q2_metadata/__init__.py:9: in <module> > from ._tabulate import tabulate > q2_metadata/_tabulate.py:13: in <module> > import pandas as pd > /usr/lib/python3/dist-packages/pandas/__init__.py:26: in <module> > from pandas._libs import (hashtable as _hashtable, > /usr/lib/python3/dist-packages/pandas/_libs/__init__.py:4: in <module> > from .tslib import iNaT, NaT, Timestamp, Timedelta, OutOfBoundsDatetime > stringsource:105: in init pandas._libs.tslib > ??? > E AttributeError: type object 'pandas._libs.tslib.array' has no > attribute '__reduce_cython__' > _ ERROR collecting > .pybuild/cpython3_3.7/build/q2_metadata/tests/test_tabulate.py _ > /usr/lib/python3/dist-packages/py/_path/local.py:701: in pyimport > __import__(modname) > q2_metadata/__init__.py:9: in <module> > from ._tabulate import tabulate > q2_metadata/_tabulate.py:13: in <module> > import pandas as pd > /usr/lib/python3/dist-packages/pandas/__init__.py:26: in <module> > from pandas._libs import (hashtable as _hashtable, > /usr/lib/python3/dist-packages/pandas/_libs/__init__.py:4: in <module> > from .tslib import iNaT, NaT, Timestamp, Timedelta, OutOfBoundsDatetime > stringsource:105: in init pandas._libs.tslib > ??? > E AttributeError: type object 'pandas._libs.tslib.array' has no > attribute '__reduce_cython__' > > ----------- coverage: platform linux, python 3.7.5-final-0 ----------- > Name Stmts Miss Cover > ------------------------------------------------------------ > q2_metadata/__init__.py 6 5 17% > q2_metadata/_distance.py 11 11 0% > q2_metadata/_tabulate.py 24 20 17% > q2_metadata/_version.py 4 4 0% > q2_metadata/plugin_setup.py 8 8 0% > q2_metadata/tests/__init__.py 0 0 100% > q2_metadata/tests/test_distance.py 28 28 0% > q2_metadata/tests/test_plugin_setup.py 7 7 0% > q2_metadata/tests/test_tabulate.py 65 65 0% > ------------------------------------------------------------ > TOTAL 153 148 3% > > !!!!!!!!!!!!!!!!!!! Interrupted: 3 errors during collection > !!!!!!!!!!!!!!!!!!!! > =========================== 3 error in 0.41 seconds > ============================ > E: pybuild pybuild:341: test: plugin custom failed with: exit code=2: cd > /build/q2-metadata-2019.10.0+dfsg/.pybuild/cpython3_3.7/build; py.test-3 > --cov=q2_metadata > dh_auto_test: pybuild --test -i python{version} -p 3.7 -s custom > "--test-args=cd {build_dir}; py.test-3 --cov=q2_metadata" returned exit > code 13 > make[1]: *** [debian/rules:22: override_dh_auto_test] Error 255 > > > It might be that this is a Pandas version issue (latest Pandas > version is blocked due to Python3 migration). > > Kind regards > > Andreas. > > > On Mon, Nov 11, 2019 at 11:00:11PM +0000, Thorsten Alteholz wrote: > > > > Hi Liubov, > > > > please also mention at least the MIT license in your debian/copyright. > > > > This software also contains versioneer. > > > > Thanks! > > Thorsten > > > > > > > > === > > > > Please feel free to respond to this email if you don't understand why > > your files were rejected, or if you upload new files which address our > > concerns. > > > > > > _______________________________________________ > > Debian-med-packaging mailing list > > [email protected] > > > https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging > > -- > http://fam-tille.de >
