Hello, I will create tag. The genomes and other dependencies are must for UTAP. In my installation the user load the docker container with paths to it (according his installation parameters).
Refael. -----Original Message----- From: Andreas Tille <[email protected]> Sent: Tuesday, April 02, 2019 5:09 PM To: Tony Travis <[email protected]> Cc: Marilyn Safran <[email protected]>; Dena Leshkowitz <[email protected]>; Refael Kohen <[email protected]>; Debian Med Project List <[email protected]> Subject: Re: UTAP Hi, On Sun, Mar 31, 2019 at 06:17:16PM +0100, Tony Travis wrote: > On 31/03/2019 12:51, Marilyn Safran wrote: > > Hi Tony, > > > > Feel free to try out the software without using a docker container, > > and prepare and distribute the Debian-Med package. > > > > Please let us know when that package becomes available, and how to > > access it. > > > > And please make sure to acknowledge our paper so that others can > > contact us if needed. > > Hi, Marilyn. > > The first step is for me to let the Debian-Med team know about UTAP, > by CC to the Debian-Med mailing list, and for me to try it without > using a Docker container to see what other software dependencies UTAP > requires. > > @debian-med list, > > I'm interested in packaging UTAP: > > > https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859- > > 019-2728-2 > > ... > > The software is available under GPLv3: > > > https://utap.readthedocs.io/en/latest/ > I've contacted the upstream authors Refael Kohen, Dena Leshkowitz, and > Marilyn Safran who are willing to let us package and distribute their > UTAP software for Debian-Med. Regarding packaging it would help a lot if somebody could convince upstream to tag a release. I have not found any tags at https://bitbucket.org/bbcu/utap/downloads/?tab=tags Would you mind contacting upstream about this? Moreover, I wonder what to do with these large data, that are mentioned here https://utap.readthedocs.io/en/latest/rst/installation.html#create-a-directory-for-utap-software-and-its-output Kind regards Andreas. -- http://fam-tille.de
