Thanks for picking this up so quickly! Some people had been bugging me about declaring it stable, because it fact interfaces are fixed now.
Am Montag, 14. Januar 2019, 09:25:55 CET schrieb Michael Crusoe: > Currently we package v 1.0.3, last stable release of Debian had v1.0.1 > <https://packages.debian.org/search?searchon=sourcenames&keywords=lambda-ali > gn> , > > https://github.com/seqan/lambda/releases/tag/lambda-v2.0.0 > https://github.com/seqan/lambda/wiki/LAMBDA-%E2%86%92-lambda2-guide > > The CLI has significant changes: > > Lambda1 had two executables: lambda and lambda_indexer > > > Lambda2 has a single executable: lambda2 > > > > lambda2 has different sub-commands Yes, this was intentional to allow coexistance and clearly state that the interface is different. > The on disk format has changes: > > Lambda now stores it's index files in a separate folder instead of > > > cluttering the directory where your original .fasta file was. These > > folders > > have a .lambda extension, but are regular folders that just contain the > > different data files needed. > > There doesn't appear to be an auto-upgrader or shim script provided for > lambda v1 users. Since the index files/directories were not compatible, I felt there was no need for this. > However, there are no references from other Debian packages to > lambda-align's binaries, so upgrading to v2 without changing the package > name won't break any packages, but it will break user scripts. Since some people are definitely still using this, I would greatly appreciate if there were two packages for the next stable release of Debian! But if you think it's too much work to maintain, I would also understand that. Thanks for maintaining this! Best regards, Hannes -- Hannes Hauswedell Scientific staff & PhD candidate Freie Universität Berlin / Max Planck Institute for Molecular Genetics address Institut für Informatik Takustraße 9 Room 019 14195 Berlin telephone +49 (0)30 838-75241 fax +49 (0)30 838-75218 e-mail [email protected]
