I'll have a look. Andreas. On Sun, Oct 16, 2016 at 11:59:31PM +0200, Dylan wrote: > Hi, > Could someone review and sponsor this new package [1] ? > > Package name: bio-eagle > URL: https://data.broadinstitute.org/alkesgroup/Eagle/ > License: GPL3+ > Description: Haplotype phasing within a genotyped cohort or using a > phased reference panel > Eagle estimates haplotype phase either within a genotyped cohort or using a > phased reference panel. The basic idea of the Eagle1 algorithm is to harness > identity-by-descent among distant relatives—which is pervasive at very large > sample sizes but rare among smaller numbers of samples—to rapidly call phase > using a fast scoring approach. In contrast, the Eagle2 algorithm analyzes a > full probabilistic model similar to the diploid Li-Stephens model used by > previous HMM-based methods. > > The original name of this software is "eagle" but since there is > already a "eagle" package [2] (removed since few time but it will > probably be re-uploaded in a near futur) in Debian, I preferred (and > according to upstream) to rename the source and binary to bio-eagle. > I have used the same mechanism that for the plink package to permit to > use eagle with its original name. So, we have: > - the binary: usr/lib/debian-med/bin/eagle > - a link to this binary: usr/bin/bio-eagle > > Thank you. > > Best regards, > Dylan > > [1] https://anonscm.debian.org/git/debian-med/eagle.git/ > [2] https://tracker.debian.org/pkg/eagle > >
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