On Tue, Feb 09, 2016 at 06:50:51PM +0100, Andreas Tille wrote: > Hi Jon, > > you are now faced with my habit to repost private mails to public > mailing list if there is no privat but rather publicly interesting > content in it. Please stick to the list since otherwise publicly > relevant information will be dumped to private mailboxes which sucks. > (And sorry for violating the netiquette.) > > On Tue, Feb 09, 2016 at 05:45:55PM +0100, [email protected] wrote: > > ... for a real blast at the Sprint. I had a great time, and I think we did > > well. > > +1 > and thanks a lot for the support by DTU! > > > A quick question: how many biology packages in total does Debian Med hold? > > You can answer this question yourself: Run > > https://github.com/bio-tools/biotoolsConnect/blob/master/DebianMed/edam.sh > > and than > > $ grep -c "debian[ |]\+sid" edam.txt > 476 > > > And how many did we (me and you Steffen, and > > others) annotate during the event - i.e. create an upstream edam.yaml (or > > whatever) for ? > > I need a fresh checkout but I think it is below 30.
To give an update here is a list of currently existing edam files in the Debian Med repositories (Git+SVN): $ find . -name "*.edam" | sort ./a/abacas.edam ./a/aegean.edam ./a/ampliconnoise.edam ./a/andi.edam ./a/anfo.edam ./a/aragorn.edam ./a/arden.edam ./a/artemis.edam ./b/barrnap.edam ./b/bowtie.edam ./c/clustalo.edam ./c/codonw.edam ./d/dialign.edam ./f/fastaq.edam ./f/fastqc.edam ./f/fastx-toolkit.edam ./f/filo.edam ./h/htslib.tabix.edam ./i/indelible.edam ./k/kissplice.edam ./k/kmc.edam ./l/ltrsift.edam ./m/miniasm.edam ./m/minimap.edam ./m/mothur.edam ./m/mummer.edam ./m/muscle.edam ./p/pbsim.edam ./p/picard-tools.edam ./q/qiime.edam ./s/snpomatic.edam ./s/snp-sites.edam ./s/sra-sdk.edam ./s/ssake.edam ./t/tantan.edam ./t/trimmomatic.edam ./u/uc-echo.edam The exact number is 37 - so my estimation based on an older checkout was wrong. Thanks to all those who worked on this Andreas. -- http://fam-tille.de
