Hi,
On Mon, Jun 08, 2015 at 01:47:01AM -0700, Afif Elghraoui wrote:
> >Charles
>
> Thanks, Andreas and Charles; it just looked like someone was in the middle
> of something. There were a bunch of changes that were not in the last upload
> to unstable, so I thought I should ask first.
Asking is perfectly fine for sure and but unfinished changes which are
not very fresh usually mean that the work on this has stopped (for
whatever reason).
> In any case, I bumped the upstream version and made some changes to the
> packaging. I'm having some trouble with pbuilder/cowbuilder building this,
> though. It does not install the build-depends in time, so building for me
> fails during the initial "clean" step:
>
> I: pybuild base:170: python3.4 setup.py clean
> Traceback (most recent call last):
> File "setup.py", line 246, in <module>
> from setuptools import Extension, setup
> ImportError: No module named 'setuptools'
The clean target is executed on your local machine and not inside the
pbuilder chroot. So please do
apt-get install python3-setuptools
and the problem should vanish.
> Do you know how I can fix my pbuilder configuration to handle this properly?
> I always get something like the following towards the beginning of a build:
>
> dpkg-checkbuilddeps: Unmet build dependencies: samtools (>= 0.1.19)
> libhts-dev python-all-dev cython python3-all-dev python3-setuptools cython3
> dpkg-buildpackage: warning: build dependencies/conflicts unsatisfied;
> aborting
> dpkg-buildpackage: warning: (Use -d flag to override.)
> dpkg-buildpackage: warning: this is currently a non-fatal warning with -S,
> but will probably become fatal in the future
>
>
> If I can get past this problem, I can test it out and finish up the
> python-pysam changes. It might be ready now if someone can verify that the
> build works and lintian is ok.
I hope Charles can answer this one.
Kind regards
Andreas.
--
http://fam-tille.de
--
To UNSUBSCRIBE, email to debian-med-requ...@lists.debian.org
with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
Archive: https://lists.debian.org/20150608163824.gc27...@an3as.eu
