On 02/08/2014 08:42 AM, [email protected] wrote: > On 02/08/2014 12:16 AM, Andreas Tille wrote: >> Hi, >> >> I need to package a Java package without build system. I prepared the >> packaging at >> >> git://anonscm.debian.org/debian-med/giira.git >> >> and need to reconstruct the file GIIRA.jar which is part of >> >> http://sourceforge.net/projects/giira/files/GIIRA.zip >> >> Any idea how to create the jar file? (Feel free to commit straight to >> Git.) > I was close to get it, but I see it needs a cplex.jar coming from IBM > Cplex, which is not free (in all ways). > It seems it can work with GLPK with a command-line option (which would > be the only available option in Debian), but this means removing all > cplex references from code with patches. > > > I gonna test this. I've gone furher, remove cplex, but there is still an issue. Code references:
CigarParser.extractAllAlignDiffs() but there is no "import ...." in the code that would import CigarParser from a library or local code! and I cannot find on Internet any CigarParser class. This is related in a way or an other to samtools, but I do not see any CigarParser in libsam-java. I wonder how the source code is stable .... Any way, does anyone has an idea where this CigarParser may come from? Olivier > > Olivier >> Kind regards >> >> Andreas. >> >> >> -- >> gpg key id: 4096R/326D8438 (keyring.debian.org) >> Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 > > > -- > gpg key id: 4096R/326D8438 (keyring.debian.org) > Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to [email protected] with a subject of "unsubscribe". Trouble? Contact [email protected] Archive: http://lists.debian.org/[email protected]
